DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: Csl4 and Exosc1

Sequence 1:NP_609492.1 Gene:Csl4 FlyBaseID:FBgn0032346 Length:204 Species:Drosophila melanogaster
Sequence 2:XP_001054866.1 Gene:Exosc1 RGDID:1591855 Length:195 Species:Rattus norvegicus

Alignment Length:189 Identity:91/190 (48%)
Similarity:127/190 (67%) Gaps:7/190 (4%)


  Fly    11 CLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDSGDKCQVVSVHKPGFHLTIPATGDVV 75
            |:||||||..|:... |.|||.::|||::|.:|.:..........||||.:......:|..|.||
  Rat     8 CIPGERLCNLEEGSP-GSGTYTRHGYIFSSLAGCLTKTSENGALPVVSVMRETESQLLPDVGAVV 71

  Fly    76 TARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVIN-- 138
            |.:|.....:|||..|..|.:..|::::||.:||||:|.||||:|:|||||||||::||:||:  
  Rat    72 TCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFRPGDIVLAKVISLG 136

  Fly   139 QLEQSFLLTTAENELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPE 197
            ..:.::||||||||||||:|::    ::.|.|||:.|.|||||:|..||.||||:|.||
  Rat   137 DAQSNYLLTTAENELGVVVAHS----ESGVQMVPISWCEMQCPKTHTKEFRKVARVQPE 191

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Csl4NP_609492.1 Csl4 10..193 CDD:224021 88/184 (48%)
ECR1_N 10..47 CDD:291080 17/36 (47%)
S1_CSL4 66..156 CDD:240217 48/92 (52%)
Exosc1XP_001054866.1 ECR1_N 8..39 CDD:339207 16/32 (50%)
S1_CSL4 62..154 CDD:240217 48/92 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C193600228
eggNOG 1 0.900 E1_COG1096
Hieranoid 1 1.000
Homologene 1 1.000 H9359
Inparanoid 1 1.050 171 1.000 Inparanoid score I3972
OMA 1 1.010
OrthoDB 1 1.010 D1200489at2759
OrthoFinder 1 1.000 FOG0004220
OrthoInspector 1 1.000 T1087969
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 LDO PTHR12686
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.000

Return to query results.
Submit another query.