DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)gd1 and cc2d1b

DIOPT Version :9

Sequence 1:NP_001245976.1 Gene:l(2)gd1 / 34543 FlyBaseID:FBgn0261983 Length:834 Species:Drosophila melanogaster
Sequence 2:XP_004914063.2 Gene:cc2d1b / 100489497 XenbaseID:XB-GENE-997988 Length:864 Species:Xenopus tropicalis


Alignment Length:868 Identity:291/868 - (33%)
Similarity:461/868 - (53%) Gaps:106/868 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IPDDFDPSAGYGEDDGGDSDLEAELAAITGGEGA-KPKPKPKAKLLPASDLDKMIADSLRDVSDD 88
            ||||        .||..|.||||||||:||.:.| |||||.||. ||..|::||..|.::|...:
 Frog    39 IPDD--------PDDPDDGDLEAELAALTGVKAASKPKPKGKAP-LPMEDIEKMAQDCMKDTIGE 94

  Fly    89 DDDDNLESDPDLLGELSGIGGLEEAEEEEPVAQPPAASEEP------------------VQTFLP 135
            |||::||.|.:||.||..:.|.:|.||.|.:....|...||                  :|..|.
 Frog    95 DDDEDLEGDEELLAELQEVVGDDEEEEMEQLRPSNAEELEPPLPDILESGQQVNSSATEIQHHLQ 159

  Fly   136 TTTVDTLSIIKQRLEMYKQAEANAKTAGDSGKARRFGRGLKTLKDLHRQAAAGKSINVDDIPPEV 200
            ........::::|:..||:|.:|||.:.:|.||||:.||||||:.:......|:::...||||.|
 Frog   160 APAEGMFQVLEERIRNYKEAISNAKLSNESAKARRYERGLKTLESMLHTVKQGRAVIEADIPPPV 224

  Fly   201 SV-KPIGGQAPPVPAEES-----------PAPSTPA------SPPPVPSRAAPDPPTPGTPVEPT 247
            :. ||.......||..::           |..:|.|      |..||......|    |..|:.|
 Frog   225 ACGKPAVSPKTDVPTTDTSKEEVEDLNHVPMETTEAATNLDSSEDPVSKAITND----GGAVDKT 285

  Fly   248 TSVAPTSPPNPLVTQMRSRQTDYKAAALQSKRSGDISTALQFLKVVKQFDVVIKMCEDGQEVDLS 312
            .. ||.:..:| .|.:..||.:||.|||:||::|:|..|.:::::.|:|.||::..|.||.||||
 Frog   286 HG-APQNDTDP-KTLLLQRQREYKLAALKSKQTGNIEKAKEYMRISKKFSVVLEALESGQPVDLS 348

  Fly   313 DMPPPPAEFLEFLKKMQEEAAAEAVAEPTAAPEPTPVAPAPVLAAATNMLEALQQRLEKYQSVEA 377
            :||..|.:....:.:      ::..|.||.|| |.||:....|:|. ::|:|||||:|||:|...
 Frog   349 NMPAAPEDHDTMVTE------SKIPAHPTPAP-PVPVSNTQGLSAG-SLLQALQQRMEKYKSAAQ 405

  Fly   378 AAKAENNSGKARRFGRIVKQYEDAIKLYKAGKPVPYDELPVPPGFGPLPTADAAPVAPTPSLPTS 442
            .||:..:..|||...||.|||:|||:.:|||:.|...||||||||.|||..:  ......|:..:
 Frog   406 QAKSSGDDRKARMHERIAKQYQDAIRAHKAGRQVNLAELPVPPGFPPLPGME--QTEEEGSVEKA 468

  Fly   443 PTSPPPTASTSAGGTPSSSSATTPTAPRKAPSPPKPKELT-------------------TRTSGN 488
            ..:....|.| ||...............|.|..|||.:|.                   .:|:..
 Frog   469 LEAAQKLAKT-AGNEEDDDDGEEGECQAKPPGHPKPTQLVKPMPAVSDSEETSLTNKAPVKTASE 532

  Fly   489 QQKNNIAEQQMKLLLERQKEFKLAAIEAKKAGEIDQAKEYLKIFKGFDSLLNAASSGLPVDLSTL 553
            ::.....::|::.|..|:|:::.||::||:..:::|||:::::.......::...||..||:|.:
 Frog   533 EKLPPAVQEQLEFLEHRKKQYRKAALQAKQKNDLEQAKQHMRVAHTLQVSIDQVRSGKLVDISKV 597

  Fly   554 PVPPSQRDNLEASFAIVSAEECDPTDDICEIGVRMEEQLAKQLMMCKNTRDHHKAMGDVAGMNRF 618
            |..|   |:.|:.|.:|..|:.....:..::...:.:.|.:|...|.........||:||...||
 Frog   598 PSLP---DDEESDFVVVEHEDIKTPQNSEDVYSMLLKLLHEQHEKCIRYSKQFTQMGNVAETTRF 659

  Fly   619 ENLALTVQKDLDLVRYSKRKNEPLPKFHYEKRSFNIVHCNTDLTDSELEIVVVRGISYNVAN--- 680
            |.:|...:|:.::::.|:.:....|.:|:|.::..||...::|:.:|:.:::||||:....:   
 Frog   660 EKMAEDCKKNCEILQLSQAQGLDPPPYHFEDKTLKIVRVFSELSSTEMLLIIVRGINLPAPSGVA 724

  Fly   681 PKDVDTYVRVEFPLLNDES-FKTKTNVIRDTSSPDYDERFKVDIQRTNRQFQRIFKRHGVKFEIY 744
            |.|:|.||:.|||..:.|. .|.||.||::|:||:|:..||::|.|.:|.|:|:.:..|:||||:
 Frog   725 PNDLDAYVKFEFPYPSSEQPQKNKTLVIKNTNSPEYEHSFKLNINRNHRGFKRVIQTKGIKFEIF 789

  Fly   745 SRGCSIDCCGLSRKLPLCCFRGFLRSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRKQVGGKLEV 809
            .:|..:                 :|||..:||.:|||..|||:|||.:..::.||||..|||||:
 Frog   790 HKGFFL-----------------VRSDKQVGTASVKLDKLETQCEIREIVEVFDGRKPTGGKLEI 837

  Fly   810 KIRVRNPILTKQMEHITEKWLVL 832
            |:|:|:|:..:.::.:||||||:
 Frog   838 KVRLRDPLNGQDLQVVTEKWLVM 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)gd1NP_001245976.1 DM14 142..200 CDD:128928 23/57 (40%)
DM14 260..318 CDD:128928 26/57 (46%)
DM14 362..420 CDD:128928 31/57 (54%)
DM14 499..557 CDD:128928 16/57 (28%)
C2_Freud-1 661..832 CDD:176072 69/174 (40%)
cc2d1bXP_004914063.2 DM14 169..224 CDD:128928 23/54 (43%)
DM14 297..354 CDD:128928 26/56 (46%)
DM14 390..443 CDD:128928 27/52 (52%)
DM14 543..601 CDD:128928 16/57 (28%)
C2_Freud-1 702..860 CDD:176072 69/174 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 327 1.000 Domainoid score I1179
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 452 1.000 Inparanoid score I1568
OMA 1 1.010 - - QHG49459
OrthoDB 1 1.010 - - D408012at33208
OrthoFinder 1 1.000 - - FOG0003388
OrthoInspector 1 1.000 - - otm48559
Panther 1 1.100 - - O PTHR13076
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2281
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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