DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-3 and Smyd4-3

DIOPT Version :10

Sequence 1:NP_609464.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster
Sequence 2:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster


Alignment Length:419 Identity:92/419 - (21%)
Similarity:154/419 - (36%) Gaps:108/419 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GRYLVAKGAIR-GHGLLIEELPFA-------VGPKCNG-------PVVCLGCYEPNPDPEEELCS 70
            ||:..|...:: |..||:|. ||.       ....|..       ||.|..|      .:...||
  Fly   250 GRFARASADVKPGEELLVER-PFVSVLLEKFAKTHCENCFMRTVVPVACPRC------ADVLYCS 307

  Fly    71 ECGWPLCVECAQQADNAHFRLECSQLKDARARFFRLP----SG---SRH-------CPQLDCIMP 121
            |       :|.::|...:.:.||.          .:|    ||   :.|       ...||..:.
  Fly   308 E-------QCREEASKKYHKYECG----------IVPIIWRSGASINNHIALRIIASKPLDYFLK 355

  Fly   122 LRVLLAKEANPERWDN-------EVAPMEHHKEERQRDADVWHADRVNIAQYLRGPCQLANRFSE 179
            |:..:.:|..||:..:       .||.:|.|:.|||......|   |.:|::|....:....|..
  Fly   356 LKPTIDEELTPEQLISLPKDDFRRVAQLERHQGERQPSNFFQH---VLMARFLTNCLRAGGYFGS 417

  Fly   180 E-----------LIMQVVGVLEVNAFE----------ARSPKGYPLRCLFPYTGILAHNCVPNTS 223
            |           |:::.:..::.|..|          .|....:....::|...:..|:|.|...
  Fly   418 EPKPDEVSIICSLVLRSLQFIQFNTHEVAELHKFSSSGREKSIFIGGAIYPTLALFNHSCDPGVV 482

  Fly   224 RSIYPSEGYKIRLRAMVDLEEGQPLHHSY--TYTLDGTAQRQKHLKQGKFFTCQCERCLDP---- 282
            |..   .|..|.:.::..:|.|.|::.:|  .||.|..::||..||...:|.|.|:.|:|.    
  Fly   483 RYF---RGTTIHINSVRPIEAGLPINENYGPMYTQDERSERQARLKDLYWFECSCDACIDNWPKF 544

  Fly   283 TELGTHFSSLKC---GQCAEGFQVPRQPTEPDTSWNCANCGSDTSNADALAMLQSLQSEVNAVQA 344
            .:|.......:|   ..|:...:||  |:..|....|..||..|:....|.::|.       .:.
  Fly   545 DDLPRDVIRFRCDAPNNCSAVIEVP--PSCNDFMVKCVTCGEITNILKGLKVMQD-------TEM 600

  Fly   345 LPMAAKRL---EEIERLLRKYKSLLHPLH 370
            :...||||   .|..:.|.|:..|:..::
  Fly   601 MTRTAKRLYETGEYPKALAKFVDLIRIMY 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-3NP_609464.1 SET_SMYD <192..279 CDD:380997 24/98 (24%)
Smyd4-3NP_725048.1 TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
SET_SMYD4 235..537 CDD:380934 69/316 (22%)
zf-MYND 284..323 CDD:460312 10/51 (20%)
Blue background indicates that the domain is not in the aligned region.

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