DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim55a

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001002358.1 Gene:trim55a / 436631 ZFINID:ZDB-GENE-040718-50 Length:443 Species:Danio rerio


Alignment Length:543 Identity:111/543 - (20%)
Similarity:172/543 - (31%) Gaps:221/543 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANP-VLLPCFHALCLGCALDI---QTPYSP---GSALPGAVNGAGAASAAG 58
            :|.:|.||.|.:::..| |:|||.|.||..||.||   ..||.|   ||:|              
Zfish    19 LERQLICPICLEIFTKPVVILPCQHNLCRKCANDIFQASNPYLPTRGGSSL-------------- 69

  Fly    59 HNGLHGNGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEAD 123
                     |:||.                                                   
Zfish    70 ---------GSGGR--------------------------------------------------- 74

  Fly   124 SGVVCCSNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAI 188
                                                ..||.||..|..|..||..|.....:|.|
Zfish    75 ------------------------------------FRCPSCRHEVVLDRHGVYGLQRNLLVENI 103

  Fly   189 VDRFCAREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRES 253
            :|.:                                           ..:.:..||....::...
Zfish   104 IDMY-------------------------------------------KQESSSSKPEPQVKEEVL 125

  Fly   254 VCGEH-EETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHN------------ 305
            :|.|| :|.::.||::|..|.|.||.....||..:|..:....::||||||..            
Zfish   126 MCEEHQDERINIYCVTCSVPTCSLCKVFGSHQTCEVAPLKSVYESQKTELSDGVGLLVGNNDRIQ 190

  Fly   306 --LQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKD 368
              :.||.|..||..|..:|.|      :..|..|:||.     ||::   :||..|...|..::.
Zfish   191 GIISQLEETCRSVEENGRRQK------SRVCEWFDRLY-----ALLE---ERRGDLTLKITAEQQ 241

  Fly   369 TKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAA 433
            .|:..:...|......|..:..|::..|:.::|::.|.|||....|:.::..:....|.|.....
Zfish   242 EKLDYISGLQRKYREHLDNSAKLVETGIQTMEESEMAIFLQNTKPLLQQIAESRNVSHLEKVERG 306

  Fly   434 PRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDER-----------------CPAAP------ 475
              ...:...:.:..:..|||.:::||     ||||:.                 ..|||      
Zfish   307 --YENMDHFSANFQSERRAILSIDFI-----KDGDDNDEDEDDDEEITVNPEASSGAAPAPVQQR 364

  Fly   476 MTPTILPSDCSAENNSVTVAWQP 498
            .||...||..:|:  ||.::.:|
Zfish   365 QTPVPNPSPMAAD--SVQMSLKP 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 17/36 (47%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 0/44 (0%)
Bbox2_TRIM9-like 255..291 CDD:380822 14/36 (39%)
CC_brat-like 298..420 CDD:475168 35/135 (26%)
FN3 472..564 CDD:238020 11/33 (33%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947
trim55aNP_001002358.1 RING_Ubox 20..83 CDD:473075 30/172 (17%)
Bbox2_MuRF 126..164 CDD:380846 14/37 (38%)
PRK04654 <352..422 CDD:135173 11/36 (31%)
Blue background indicates that the domain is not in the aligned region.

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