DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and trim63a

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001002133.1 Gene:trim63a / 415223 ZFINID:ZDB-GENE-040625-139 Length:345 Species:Danio rerio


Alignment Length:474 Identity:87/474 - (18%)
Similarity:156/474 - (32%) Gaps:160/474 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANP-VLLPCFHALCLGCA---LDIQTPYSPGSALPGAVNGAGAASAAGHNG 61
            :|.:|.||.|..::..| |:|||.|.||..||   .|.:.||                       
Zfish    18 LEKQLSCPICLDMFTKPVVILPCQHNLCRSCASELYDSKNPY----------------------- 59

  Fly    62 LHGNGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGV 126
             |.:||                                                  ||       
Zfish    60 -HFSGG--------------------------------------------------IF------- 66

  Fly   127 VCCSNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDR 191
                                              .||.||..|..|..||..|.....:|.|:| 
Zfish    67 ----------------------------------RCPTCRFEVVLDRHGVYGLQRNLLVENIID- 96

  Fly   192 FCAREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRESVCG 256
                                :..:|.|              :|   .:.|..|..:.:.:|.:|.
Zfish    97 --------------------IYKQQLE--------------KG---SNALEPPLKSKETKEPMCD 124

  Fly   257 EH-EETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFI 320
            .| ||.::.||::|:.|.|.:|....:|:..:|.::....:.||:||.:::..|..........:
Zfish   125 VHEEEKINIYCVTCQTPTCSMCKVFGQHKDCEVSTLKSVYEVQKSELKNSIDLLGASNSCLQAML 189

  Fly   321 QRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKL 385
            .:::..|..|.|:|...::.:..:.:.|...:.||:.:|||.|..::|.|:.:::........:|
Zfish   190 SQMEETSKTVEENCQAQKQKLGEKFDHLYAVLEDRKTHLLEQITQEQDEKVAVIRSLVQQYNEQL 254

  Fly   386 QQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALA 450
            |.:..|:....:.:...::|.||.....|:  :...|.|.:..:....|....:...|:|...:.
Zfish   255 QASIKLMDKASQTMDNNNTAEFLIAAKQLL--IEAKDATKNSHLQRPEPGFESMDHFTIDTEDVE 317

  Fly   451 RAIDNLNFIQMRAVKDGDE 469
            ..:..::|.......|.||
Zfish   318 AVLTKMDFGVGGIDNDDDE 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 16/36 (44%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 4/44 (9%)
Bbox2_TRIM9-like 255..291 CDD:380822 12/36 (33%)
CC_brat-like 298..420 CDD:475168 25/121 (21%)
FN3 472..564 CDD:238020
SPRY_PRY_TRIM67_9 561..735 CDD:293947
trim63aNP_001002133.1 RING_Ubox 22..72 CDD:473075 24/164 (15%)
Bbox2_MuRF 122..160 CDD:380846 12/37 (32%)
CC_brat-like 186..283 CDD:475168 19/96 (20%)
Blue background indicates that the domain is not in the aligned region.

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