DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and Trim55

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001074750.1 Gene:Trim55 / 381485 MGIID:3036269 Length:545 Species:Mus musculus


Alignment Length:699 Identity:136/699 - (19%)
Similarity:214/699 - (30%) Gaps:256/699 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANP-VLLPCFHALCLGCALDI---QTPYSPGSALPGAVNGAGAASAAGHNG 61
            :|.:|.||.|.:::..| |:|||.|.||..||.||   ..||.|                     
Mouse    20 LEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLP--------------------- 63

  Fly    62 LHGNGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGV 126
                                   ||.                                       
Mouse    64 -----------------------TRG--------------------------------------- 66

  Fly   127 VCCSNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDR 191
                                 |..||..|.   ..||.||..|..|..||..|.....:|.|:| 
Mouse    67 ---------------------GTTVASGGR---FRCPSCRHEVVLDRHGVYGLQRNLLVENIID- 106

  Fly   192 FCAREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRESVCG 256
                                 |.:|          |.|.|.:      .|.:|         :|.
Mouse   107 ---------------------IYKQ----------ESTRPEK------KLDQP---------MCE 125

  Fly   257 EH-EETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFI 320
            || ||.::.|||:|:.|.|.||.....|:...|..:....:.||:|||..:..|....       
Mouse   126 EHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAVLVGSN------- 183

  Fly   321 QRLKGMSDKVTESCMEFERLVHAQ----CEA---LIQAIHDRREYLLEAIRMDKDTKIRILKDQQ 378
            .|::|:..::.::|...|.....|    ||.   |...:.:|:..:.:||...::.|:..::...
Mouse   184 DRVQGVISQLEDTCKTIEECCRKQKQDLCEKFDHLYGILEERKTEMTQAITRTQEEKLEHVRTLI 248

  Fly   379 SNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEV-------------- 429
            ...:..|:..:.|::..|:.:.|.:.|.|||....|:.::......:..|.              
Mouse   249 RKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLQKIVEASKAFQMEKLEQGYEIMSNFTVN 313

  Fly   430 TNAAPRVSPIVDLTL-----------------DDAALARAIDNLNFIQMRAVKDGDERCPAAPMT 477
            .|...::...:|.:.                 :||......:|     ::....|:|........
Mouse   314 LNREEKIIREIDFSREEEEEEDAGEIDEEGEGEDAVEVEEAEN-----VQIASSGEEESLEKAAE 373

  Fly   478 PTILPSDCSAENNSVTVAWQPPNHSF--------VEGYVLELDDGSGGEFREVYCGKETICTVDG 534
            |:.||::.......:..:...|..|.        .:|.|:.:  ||....:....|.....|.|.
Mouse   374 PSQLPAELQVAPEPLPASSPEPFSSMPPAADVLVTQGEVVPI--GSQQTTQSETSGPSAAETADP 436

  Fly   535 LHFNSMYNARVK--------AFNSAGEGEYSEL----IGLQTAEVAWFTFDPVLSGGAGSGLIFS 587
            |.:.|.|..:.:        ...|.|.|:...|    ..:|:||||....:   ...|.||...|
Mouse   437 LFYPSWYKGQSRKTSSNPPCTHGSEGLGQIGPLGIEDSSVQSAEVAEAATN---EQAAVSGKESS 498

  Fly   588 KNNATVSVEGWE------HRVALGSVGFSRGVHYWEFTIDNYTADTDPA 630
            ...||..: |:|      ...||||.|               .||.:||
Mouse   499 STAATSQI-GFEAPSPQGQSAALGSGG---------------GADPEPA 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 17/36 (47%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 6/44 (14%)
Bbox2_TRIM9-like 255..291 CDD:380822 15/36 (42%)
CC_brat-like 298..420 CDD:475168 27/128 (21%)
FN3 472..564 CDD:238020 19/111 (17%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 22/76 (29%)
Trim55NP_001074750.1 RING-HC_MuRF2 21..84 CDD:438417 30/169 (18%)
Bbox2_MuRF2_C-II 122..166 CDD:380890 16/52 (31%)
EzrA <158..>323 CDD:428797 30/171 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 324..352 3/27 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 359..378 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..532 33/134 (25%)

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