DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trim9 and mid1

DIOPT Version :10

Sequence 1:NP_001188786.1 Gene:Trim9 / 34453 FlyBaseID:FBgn0051721 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002663478.1 Gene:mid1 / 100330952 ZFINID:ZDB-GENE-110411-205 Length:667 Species:Danio rerio


Alignment Length:813 Identity:201/813 - (24%)
Similarity:304/813 - (37%) Gaps:229/813 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGN 65
            :|.||.||.|.:|:.:|:||||.|:||..||..|.|                             
Zfish     4 LESELTCPICLELFEDPLLLPCAHSLCFHCAHRILT----------------------------- 39

  Fly    66 GGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCS 130
                                   ||.:|.                |:|.|               
Zfish    40 -----------------------SHCAAF----------------DESSK--------------- 50

  Fly   131 NTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRF--- 192
                                  ||.|   ..||.||.::..|..|:..|.....::.|::||   
Zfish    51 ----------------------PPSA---FQCPTCRYVITLDQQGLDGLKRNVTLQNIIERFQKA 90

  Fly   193 ---------------------CAREALRCQMCETD-PKVASLICEQCEIRYCDACRELTHPARGP 235
                                 .|.||::||.||.| |:.|...|..||:.||..|...|||.:.|
Zfish    91 SLSGPNSPTETRKQISPSAMSSACEAVQCQFCEQDPPQEAVKTCVTCEVSYCQECLRATHPNKKP 155

  Fly   236 LAKHTLVKPRGAAQQRESVCGEH-EETLSQYCLSCKAPACGLC--IGELRHQAHDVQSINVTCKA 297
            ...|.|.:|...|:.|...|.|| ||.::.||::.:...|.||  :|  .|:.|.|.|:......
Zfish   156 FTGHRLTEPVPDARLRGLACPEHGEEKVNMYCITDEQLICSLCKLVG--HHREHQVASLGERYDK 218

  Fly   298 QKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFE-RLVH------AQCEALIQAIHDR 355
            .|..|..||..|.::.       ..|:.:..|:.::|...| ...|      .:|:.||..:..|
Zfish   219 LKQMLDSNLSNLIKRN-------SELENLMAKLIQTCQHVEHNAAHQESKLTEECDTLINIVQQR 276

  Fly   356 REYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTN 420
            |:.:...|:..|..::|.|..|.:||...:::::.||....:||||||.|.|||:...:..||: 
Zfish   277 RQIIGTKIKEGKVVRLRKLAQQIANCKQFVERSSSLIIQADQALKETDHARFLQMAKSISERVS- 340

  Fly   421 TDMTWHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDERCPAAPMTPTILPSDC 485
                    :..|:.:|. |.::.|:|...|.|:|   |.:.:.:.:|.:.. .||..|||....|
Zfish   341 --------MATASSQVL-IPEINLNDTFDAFALD---FSREKKMLEGLDYL-TAPNAPTIREELC 392

  Fly   486 SAENNSVTVAWQPPNHSFVEGYVLELDDGSGGEFREVYCG-----------KETICTVDGLHFNS 539
            :|.::::||.|...:...|..|.|:....:|.......|.           |:...||.||...:
Zfish   393 TASHDTITVHWTSEDEFSVVSYELQYTISTGQANVVSLCNSMDSWMIVPNIKQNHYTVHGLQSGT 457

  Fly   540 MYNARVKAFNSAGEGEYSELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVE-------- 596
            .|...|||.|.|  |..|...|........|..||   ..|...|..|.:|.||..:        
Zfish   458 KYIFIVKAMNQA--GSRSSPPGQLKTNSQPFKLDP---KSAHRKLKVSHDNLTVERDEASSMKSH 517

  Fly   597 ------GWEHRVALGSVGFSRGVHYWEFTIDNYTADTDPAFGVARIDVARNKMLGKDEKSFAMYI 655
                  |..:....|:|....|.||||..|.   ..|..|.|:|.....::..:|||..|:.  :
Zfish   518 AQDRFGGTGNYGVTGNVYIDSGRHYWEVLIG---GSTWFAIGIAYKSAPKHGWVGKDSTSWV--L 577

  Fly   656 DR-QRSW-FQHN--------SIHERRVEGGITTGSTIGVLLDLERHTLSFL----VNEMPQGSVA 706
            .| ..|| .:||        |.|.||          :|||||.:..:|:|.    ...:....:|
Zfish   578 SRCNTSWAVRHNSKEFPIEPSPHMRR----------LGVLLDYDSGSLAFYDAAGTQHLYTFDIA 632

  Fly   707 FRD----LYGVFYPAVSINRGVTLTMHTAMDAP 735
            |..    ::.|:...:::..|:.:..|..:..|
Zfish   633 FSQPICPVFSVWNKCLTVLTGLPIPDHLEISDP 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trim9NP_001188786.1 RING-HC_TRIM9-like_C-I 2..>35 CDD:438238 17/32 (53%)
Bbox1_TRIM9-like_C-I 199..244 CDD:380861 19/45 (42%)
Bbox2_TRIM9-like 255..291 CDD:380822 14/38 (37%)
CC_brat-like 298..420 CDD:475168 36/128 (28%)
FN3 472..564 CDD:238020 29/102 (28%)
SPRY_PRY_TRIM67_9 561..735 CDD:293947 48/205 (23%)
mid1XP_002663478.1 RING_Ubox 1..71 CDD:473075 33/174 (19%)
Bbox1_MID1_C-I 115..164 CDD:380894 21/48 (44%)
Bbox2_MID 173..212 CDD:380816 14/40 (35%)
CC_brat-like 219..344 CDD:475168 36/140 (26%)
COS 323..374 CDD:465805 17/63 (27%)
FN3 381..481 CDD:238020 29/101 (29%)
SPRY 485..661 CDD:470632 47/193 (24%)

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