DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManII and aman-3

DIOPT Version :10

Sequence 1:NP_609408.1 Gene:LManII / 34437 FlyBaseID:FBgn0027611 Length:1080 Species:Drosophila melanogaster
Sequence 2:NP_001361919.1 Gene:aman-3 / 172178 WormBaseID:WBGene00018594 Length:1046 Species:Caenorhabditis elegans


Alignment Length:1059 Identity:250/1059 - (23%)
Similarity:433/1059 - (40%) Gaps:233/1059 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PKASQCGYQSCHPTKPNMLNVHLVAHTHDDVGWLKTVDQYYYGSETKIQKAGVQYIIDSVVEALL 93
            |.||:       .::...|.|:::..||.|.|||:|.::|     ||    ....|:|::.:.::
 Worm   108 PPASK-------KSRTEKLKVYVLPFTHVDPGWLETFERY-----TK----STNQILDNMHQFMM 156

  Fly    94 RDPEKRFIYVESAFFFKWWKEQKPKVQEAVKMLVEQGRLEFIGGAWSMNDEATTHYQSVIDQFSW 158
            ::.:.||::.|..||.:||..|..:|:|.||.||.:||||...|:|.|.|||..::...:|....
 Worm   157 KNEKMRFMWAEFVFFERWWSLQNEQVKEDVKKLVTEGRLELATGSWVMTDEANPYFPVSVDNIVE 221

  Fly   159 GLRLLNDTFGECGRPRVGWQIDPFGHSREMASMFAQMGFDGMFFGRLDYQDKDERLMTKNAEMIW 223
            |.:.::..||.  :|:..|..||||:|..:..:|.:.|.......|:.::.|......|.....|
 Worm   222 GFQFIHKNFGI--KPQTMWSNDPFGYSNSVPYLFKKSGVHRTVINRIHHKLKQTLQSQKAIPFKW 284

  Fly   224 HGSANLGEEADLFSGAL-YNNYQAPDGFCFDIL--C-NDAPI---IDGKH---------SPDN-- 270
            ....:...|.|:.:..| |.:|        |||  | :||.:   .|.|.         .|:.  
 Worm   285 RQYFDATGEDDVLTQILPYTHY--------DILNSCGSDASVCCEFDFKRMTHWSCPGPKPEKIT 341

  Fly   271 --NVKERIDTFLDFAKTQSQYYRTNNIIVTMGGDFTYQAAQVYYKNLDKLIRYGNERQANGSNIN 333
              ||..:.:..::..:..|:.|:...|::..|.||.:...:.:.:..|..|...:|.. .||.:.
 Worm   342 NANVAAKAEKLVNQLEKMSEMYKAPVILMMHGDDFRFDMIEEWNQQHDNFIPVFDEIN-KGSRVE 405

  Fly   334 LLYSTPSCYLKSLHDAGITW---------PTKSDDFFPYASDPHAYWTGYFTSRPTLKR------ 383
            :.:.|.:.|...|.    .|         ||.|.|||||......|||||:|:||..||      
 Worm   406 IRFGTFTDYFNDLE----KWYSNNKDSEPPTVSGDFFPYMCALGDYWTGYYTTRPFFKRQGRLLH 466

  Fly   384 -FERDGNHFLQVCKQLSALAPKKPEEFDPHLTFMRETLGIMQHHDAITGTEKEKVALDYAKRMSV 447
             ..|:|:..|.:.:  ..|..:|..|....|...|..|.:.|||||||||.|..|..:|::.:..
 Worm   467 SLIRNGDIMLSMLR--VNLKQRKIGENVKRLEAARRNLALFQHHDAITGTSKVSVMDNYSELLHA 529

  Fly   448 AFRACGATTRNALNQLTVQSKD---NVKDTSAKYVFEFKTCALLNITSCPVSEANDRFALTLYNP 509
            :.    .:|...|..||....|   .:.|.     .|.:|...|        |:::: .:.::|.
 Worm   530 SI----VSTNIVLENLTKSDIDLYPRIHDG-----IELQTIVDL--------ESSEK-EIRIFNS 576

  Fly   510 LAHTVNEYVRIPVPYSNYRIIDNKGVTLESQAVPIPQVLIDIKHRNSTAKYEIVFLATNIPALGY 574
            ....:.:..:|.|..... |:...|..:|:|..|..|     |.:.....:.::|.||.:| |..
 Worm   577 HLFEITDVFKIRVKEREV-IVSIDGKIIEAQLEPFFQ-----KSKVEKDSFLLLFQATVLP-LSM 634

  Fly   575 RTYYVEKLDSTEGNTRSKALPKRTS-----SVTVIGNSHIQLGFDTNGFLSEVTADGLTRLV--- 631
            ....|::.||......:|...|.|:     |...|.:|......:|..|  :|:.|.:|..:   
 Worm   635 MKVKVQRGDSGGLTKMAKIEAKDTNAWDLGSSWTIASSTSAPNLETPYF--KVSNDPITGAIQSV 697

  Fly   632 -----------SQEFLFYEGAVGNNAEFLNRSSGAYIFRPNENKIHFATDQVEIEVYK-----GD 680
                       .|.|..|:.|.|          |||:.|     :|  |:..||..|:     |.
 Worm   698 NKLSDNSKFHCQQSFYNYKEAGG----------GAYLMR-----LH--TNPKEIIEYQWLKVSGP 745

  Fly   681 LVHEVHQKFNDWISQVVRVYNKDSYAEFEWLVGP----------IPIDDGIGKEVITRFNSDIAS 735
            |...::||..: :.|.:.::|.:         ||          |.|......|::|||::. ..
 Worm   746 LRQSIYQKSTN-VLQRLSIHNVE---------GPSGEEVDISMSIDITKERNTELMTRFSTK-WD 799

  Fly   736 DGIFRTDSNGREMIKRKINHRDTWSVKINEAVAGNYYPITTKIDVEDDTARMAILTDRAQGGSSL 800
            ..:..|||.|.::::     ||.:.:    .|..||||:.|...::....|::|:::...|...|
 Worm   800 KPLTYTDSVGMQLLR-----RDFYKL----PVQSNYYPMPTAAVLQSGKQRLSIVSNVEHGARFL 855

  Fly   801 KDGSLELMVHRRLLKDDAFGVGEALNETEYGDGLIARGKHHLFFGKSTDREGVSLKGIERLTQLE 865
            :.|::|:.:.|.|.:||             |.||          |...|...:.:|.::...:| 
 Worm   856 ESGTVEINIDRILNQDD-------------GKGL----------GTGPDAIPIDMKPVDMKFKL- 896

  Fly   866 KLLPTWKFFSNMED-------YSADEW---QTAFTNIFSGI-------------------SLVLP 901
                   .|.::|.       ||...:   |...|.|:..:                   :|..|
 Worm   897 -------IFDSLESDPTENSRYSTHSFRAQQAVQTIIYPPMMFNRPPKKEEDIEEIEEISNLKFP 954

  Fly   902 KPVHLLTLEPWHEN-QLLVRFEH--IMENGEDASYSQPVQFNVKNVLSAFDVEGIRETTLDGNAW 963
            ..:.|||:.|..:| |||:.:.|  :..:.:..:....::.::.::|.....:.:::|.|.|...
 Worm   955 CDIQLLTVRPLEDNKQLLILYRHATVCSSQKVGNCGGELKSSLMDLLIKLGAKQVQKTDLSGVTR 1019

  Fly   964 LDESRRLQFAPDPEEAAFN 982
            :....::::.||.|...|:
 Worm  1020 VGGIIKVEYLPDYELKTFD 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManIINP_609408.1 PLN02701 47..823 CDD:178304 214/848 (25%)
GH38N_AMII_LAM_like 47..323 CDD:212121 79/295 (27%)
aman-3NP_001361919.1 PLN02701 117..978 CDD:178304 238/981 (24%)
GH38N_AMII_GMII_SfManIII_like 118..452 CDD:212120 98/357 (27%)

Return to query results.
Submit another query.