DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIB and Brf2

DIOPT Version :10

Sequence 1:NP_476888.1 Gene:TfIIB / 34430 FlyBaseID:FBgn0004915 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_001019944.1 Gene:Brf2 / 306542 RGDID:1308817 Length:416 Species:Rattus norvegicus


Alignment Length:303 Identity:66/303 - (21%)
Similarity:114/303 - (37%) Gaps:73/303 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPLIED--YRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTI 82
            |.|:||  |....::||:||.||.:.|:..     |||:|                   |:|..:
  Rat    13 SELVEDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSDE-------------------GNLREV 53

  Fly    83 -IGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHD 146
             ....||            :|.:...|..|.|    :.:..:...:.||.|..:.|.:.:::.:.
  Rat    54 TYSRSTG------------ENEQVSRSQQRDL----RRVRDLCRILKLPLTFEETAVSYYQKAYQ 102

  Fly   147 GKNLKG---RSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLTLKALETSVDLI 208
            ...::.   :..:.....|:.|.|||...|.|...||.:...........:...:|.|...|..:
  Rat   103 LSGIRAARLQKKEVVVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSL 167

  Fly   209 TTADFMCRFCANLDL----PNMVQRAATHIAKK-------------AVEMDIVPGRSPISVAAAA 256
            ..||.:..:|::..|    |:|   .|.::..|             |.|..:|.||.|:.:..||
  Rat   168 CLADLVKSYCSSFKLFQASPSM---PAKYVEDKDKMLSRTLLLVELANETWLVTGRHPLPIITAA 229

  Fly   257 IYMASQA-SEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKL 298
            .::|.|: ....|....:.....:|:|      .|.||.|::|
  Rat   230 TFLAWQSLRPSDRLTCSLARFCKLANV------DLPYPAASRL 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIBNP_476888.1 SUA7 1..289 CDD:441015 61/292 (21%)
Brf2NP_001019944.1 tfb 1..233 CDD:234758 56/262 (21%)
CYCLIN_BRF2 66..162 CDD:410258 18/99 (18%)
Repetitive region 72..157 14/88 (16%)
Interaction with target DNA. /evidence=ECO:0000250|UniProtKB:Q9HAW0 108..114 0/5 (0%)
Repetitive region 173..249 17/78 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 317..385
Required for the formation of a ternary complex with DNA and TBP, not required for interaction with TBP in the absence of DNA. /evidence=ECO:0000250|UniProtKB:Q9HAW0 354..360
Required for interaction with TBP and formation of a ternary complex with DNA and TBP. /evidence=ECO:0000250|UniProtKB:Q9HAW0 362..416
Blue background indicates that the domain is not in the aligned region.

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