DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIB and brf1

DIOPT Version :10

Sequence 1:NP_476888.1 Gene:TfIIB / 34430 FlyBaseID:FBgn0004915 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_001182550.1 Gene:brf1 / 100170638 XenbaseID:XB-GENE-946065 Length:665 Species:Xenopus tropicalis


Alignment Length:53 Identity:13/53 - (24%)
Similarity:21/53 - (39%) Gaps:12/53 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 EVFLTAEDDSVGIHQIELEVQEQRVTVGSPRYR-LELTLPHRINPDRGNAAWL 175
            ||....||.:|.:..:....:.|.:.|    |: .|.:.||       |..|:
 Frog   182 EVLSGGEDGAVRLWDLRTAKEVQTIEV----YKHEECSRPH-------NGRWI 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIBNP_476888.1 SUA7 1..289 CDD:441015 13/53 (25%)
brf1NP_001182550.1 TF_Zn_Ribbon 4..45 CDD:400527
CYCLIN_TFIIIB90_rpt1 84..174 CDD:410256
CYCLIN_TFIIIB90_rpt2 179..270 CDD:410257 13/53 (25%)
MRPL52 <294..341 CDD:465836
BRF1 445..541 CDD:462250
Blue background indicates that the domain is not in the aligned region.

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