DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and UBQ12

DIOPT Version :10

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_564675.1 Gene:UBQ12 / 841949 AraportID:AT1G55060 Length:230 Species:Arabidopsis thaliana


Alignment Length:76 Identity:72/76 - (94%)
Similarity:75/76 - (98%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||:|:||||||||||||||||||||||||||||||:||||||||
plant    77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141

  Fly    66 TLHLVLRLRGG 76
            |||||||||||
plant   142 TLHLVLRLRGG 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 70/74 (95%)
Ribosomal_S27 103..147 CDD:460261
UBQ12NP_564675.1 Ubl1_cv_Nsp3_N-like 1..76 CDD:475130
Ubl_ubiquitin 77..152 CDD:340501 70/74 (95%)
Ubl_ubiquitin 153..228 CDD:340501 72/76 (95%)
Blue background indicates that the domain is not in the aligned region.

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