DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and AT4G05270

DIOPT Version :10

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_192436.1 Gene:AT4G05270 / 825875 AraportID:AT4G05270 Length:129 Species:Arabidopsis thaliana


Alignment Length:70 Identity:24/70 - (34%)
Similarity:35/70 - (50%) Gaps:1/70 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLSDYNIQKE 64
            |:..|:.|.|.:..|||:..||:..||.||:..:.||..:|.||..| ..|.:..|:....|...
plant     1 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPT 65

  Fly    65 STLHL 69
            |.:.|
plant    66 SDIQL 70

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 24/70 (34%)
Ribosomal_S27 103..147 CDD:460261
AT4G05270NP_192436.1 ubiquitin 3..73 CDD:459726 23/68 (34%)
Blue background indicates that the domain is not in the aligned region.

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