DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and HisCl1

DIOPT Version :10

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster


Alignment Length:355 Identity:85/355 - (23%)
Similarity:150/355 - (42%) Gaps:53/355 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSP---LPASLSLFVLLIFLAIIKESCQGPH----------EKRLLNHLLSTYNTLE-RPVANE 51
            |.||   |.....|..|.|:|..:::|.|..|          ...|::|..|:.:..: .|:.::
  Fly     1 MQSPTSKLVEFRCLIALAIYLHALEQSIQHCHCVHGYRNNTESAELVSHYESSLSLPDILPIPSK 65

  Fly    52 S-----------EPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRW--NETEYGGVKD 103
            :           :|..|.|.:|:..:..::|::....|:.:|...|.|..||.  |.:|...:.|
  Fly    66 TYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILD 130

  Fly   104 LRITPNKLWKPDVLMYNSADEGFDGTYHTNIV------VKHNGSCLYVPPGIFKSTCKIDITWFP 162
            :... :.:|:||....|:...    |:|...:      :.|:.:.||:.......:|.:....:|
  Fly   131 VDWL-HSIWRPDCFFKNAKKV----TFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYP 190

  Fly   163 FDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFITNGEWYLLAMPGKKN-----TIVYACCPE 222
            .|.|.|.|...|.::....|..:.|..|     ..:.|.|..|..:....|     ||.|:  ..
  Fly   191 HDTQICSMMIESLSHTVEDLVFIWNMTD-----PLVVNTEIELPQLDISNNYTTDCTIEYS--TG 248

  Fly   223 PYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLGVTILLSLTVFLNLV 286
            .:..:.....:|||..|:.|:..:|..||..|:.:.|.:.|:: ..::|||||.||:|.......
  Fly   249 NFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQS 313

  Fly   287 AESMPTTSDAVPLIGVTI-LLSLTVFLNLV 315
            .:|:|..| .|..|.|.: ..|:.|||:|:
  Fly   314 QQSLPPVS-YVKAIDVWMSSCSVFVFLSLM 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:455710 81/342 (24%)
LGIC_ECD_nAChR 55..236 CDD:349798 40/193 (21%)
Cys-loop 154..168 CDD:349798 4/13 (31%)
HisCl1NP_731632.1 LGIC_ECD_HisCl 78..262 CDD:349793 41/195 (21%)
Cys-loop 182..196 CDD:349793 4/13 (31%)
LGIC_TM_anion 265..>351 CDD:349851 27/79 (34%)
TM1 helix 265..288 CDD:349851 7/22 (32%)
TM2 helix 292..316 CDD:349851 8/23 (35%)
TM3 helix 324..350 CDD:349851 7/19 (37%)

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