DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13123 and prdm16

DIOPT Version :10

Sequence 1:NP_609315.1 Gene:CG13123 / 34303 FlyBaseID:FBgn0032150 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_021334166.1 Gene:prdm16 / 796720 ZFINID:ZDB-GENE-080613-2 Length:1336 Species:Danio rerio


Alignment Length:249 Identity:59/249 - (23%)
Similarity:102/249 - (40%) Gaps:58/249 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 TEEEPENQ--------ASDEFEILEE---FRRIPLDYVVLDPDRPTETRQTRRRTDSCTKPS--- 149
            |.|:.:|.        |.||...|.:   ..::|..:..| |..|...:|....   ..|||   
Zfish   869 THEQRKNHVYGTNCKAAKDEHPALNQNLHQPQMPQQHTSL-PQPPVPQQQPSLH---YAKPSPFF 929

  Fly   150 ----------QRLANQDSLIVSEFLPATTA--QPRLDLSDSQLEQLESPAYEMRTVDYAAVELKH 202
                      ::|.:....:..::|..|..  .|::...::..|:|||         ::|::|..
Zfish   930 MDPIYSRVEKRKLLDPVGALKEKYLRPTPLLFHPQVSAMENMTEKLES---------FSALKLDA 985

  Fly   203 YNLDEYNEANRLLDVE---PSGSQAI-------YKCQYC----PLAYASPQYLKTHV-RNSHVCK 252
            .|..::: ::.|.:..   ||.|.||       |.|:||    |.:....::|:||. ...:.||
Zfish   986 PNSLQHS-SHHLFNFRSPPPSLSDAILRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCK 1049

  Fly   253 YCTTAFAKVRDLNEHIRQKHPHH---QCVVCSNNFSTSSNLRAHLKKIHGVQLP 303
            ||..:|:...:|..|:|..|...   :|.:|:..|...:||..||||.....:|
Zfish  1050 YCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHENIP 1103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13123NP_609315.1 zf-AD 6..82 CDD:471776
PHA00733 175..272 CDD:177301 29/111 (26%)
C2H2 Zn finger 228..245 CDD:275368 6/20 (30%)
C2H2 Zn finger 251..272 CDD:275368 8/20 (40%)
KREPA <269..>303 CDD:483960 11/36 (31%)
C2H2 Zn finger 277..298 CDD:275368 9/20 (45%)
prdm16XP_021334166.1 PR-SET_PRDM16 61..224 CDD:380990
C2H2 Zn finger 234..275 CDD:275368
C2H2 Zn finger 283..303 CDD:275368
zf-H2C2_2 298..319 CDD:463886
C2H2 Zn finger 311..331 CDD:275368
C2H2 Zn finger 339..361 CDD:275368
zf-C2H2 370..392 CDD:395048
C2H2 Zn finger 372..392 CDD:275368
C2H2 Zn finger 400..454 CDD:275368
C2H2 Zn finger 463..481 CDD:275368
COG5048 998..>1174 CDD:227381 32/106 (30%)
zf-C2H2 1018..1040 CDD:395048 6/21 (29%)
C2H2 Zn finger 1020..1040 CDD:275368 5/19 (26%)
zf-H2C2_2 1032..1056 CDD:463886 7/23 (30%)
SUF4-like 1048..>1103 CDD:411020 18/54 (33%)
C2H2 Zn finger 1048..1074 CDD:411020 9/25 (36%)
C2H2 Zn finger 1048..1069 CDD:275368 8/20 (40%)
C2H2 Zn finger 1077..1098 CDD:411020 9/20 (45%)
C2H2 Zn finger 1077..1097 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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