DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13123 and Prdm16

DIOPT Version :10

Sequence 1:NP_609315.1 Gene:CG13123 / 34303 FlyBaseID:FBgn0032150 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_006539234.1 Gene:Prdm16 / 70673 MGIID:1917923 Length:1277 Species:Mus musculus


Alignment Length:321 Identity:76/321 - (23%)
Similarity:112/321 - (34%) Gaps:98/321 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LIEAMFGWNIALNLTEELPMICNDCLEDCLQQYAFFRKLTF-ANQ----------QLLQLYNEAE 88
            |.||.|||...|..||....  ..|::..:.:.....|... |||          ::....::..
Mouse   121 LKEADFGWEQMLTDTEVSSQ--ESCIKKQISEDLGSEKFCVDANQAGSGSWLKYIRVACSCDDQN 183

  Fly    89 VEMCQVKMD-----ATEEEPENQASDEFEILEEFRRIPLDYVVLDP---DRPTETRQTRRRTDSC 145
            :.|||:...     ..:.||..      |:|...:.......|:.|   :.||      .|.|.|
Mouse   184 LAMCQINEQIYYKVIKDIEPGE------ELLVHVKEGAYSLGVMAPSLDEDPT------FRCDEC 236

  Fly   146 TKPSQRLANQDSLIVSEFLPATTAQPRLDL----------SDSQL-----EQL---------ESP 186
                      |.|.          |.||||          :.:||     |:|         :..
Mouse   237 ----------DELF----------QCRLDLRRHKKYACSSAGAQLYEGLGEELKPEGLGVGSDGQ 281

  Fly   187 AYEMRTVDYAAVELKHYNLDEYNEANRLLDVEPSGSQAIYKCQYCPLAYASPQYLKTHVRNSH-- 249
            |:|.:  |...:....|:|:::    .::..|    :..|||..||.|:.....|..| :.||  
Mouse   282 AHECK--DCERMFPNKYSLEQH----MIVHTE----EREYKCDQCPKAFNWKSNLIRH-QMSHDS 335

  Fly   250 ----VCKYCTTAFAKVRDLNEHIRQKH---PHHQCVVCSNNFSTSSNLRAHLKKIHGVQLP 303
                .|:.|...|....:|..|||.:|   ..|.|..|...|:|||.|:.| |.||....|
Mouse   336 GKRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQH-KHIHSTVKP 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13123NP_609315.1 zf-AD 6..82 CDD:471776 14/57 (25%)
PHA00733 175..272 CDD:177301 28/126 (22%)
C2H2 Zn finger 228..245 CDD:275368 5/16 (31%)
C2H2 Zn finger 251..272 CDD:275368 7/20 (35%)
KREPA <269..>303 CDD:483960 14/36 (39%)
C2H2 Zn finger 277..298 CDD:275368 9/20 (45%)
Prdm16XP_006539234.1 PR-SET_PRDM16 61..223 CDD:380990 22/109 (20%)
C2H2 Zn finger 233..253 CDD:275368 9/39 (23%)
zf-C2H2 283..305 CDD:395048 4/27 (15%)
C2H2 Zn finger 285..305 CDD:275368 3/25 (12%)
zf-H2C2_2 297..321 CDD:463886 8/31 (26%)
zf-C2H2 311..333 CDD:395048 8/22 (36%)
C2H2 Zn finger 313..333 CDD:275368 6/20 (30%)
zf-C2H2 339..360 CDD:395048 6/20 (30%)
C2H2 Zn finger 341..359 CDD:275368 5/17 (29%)
zf-C2H2 368..390 CDD:395048 10/22 (45%)
C2H2 Zn finger 370..390 CDD:275368 9/20 (45%)
zf-C2H2 396..418 CDD:395048 76/321 (24%)
C2H2 Zn finger 398..418 CDD:275368
C2H2 Zn finger 427..445 CDD:275368
zf-C2H2 953..975 CDD:395048
C2H2 Zn finger 955..975 CDD:275368
zf-H2C2_2 967..991 CDD:463886
SUF4-like 983..>1017 CDD:411020
C2H2 Zn finger 983..1009 CDD:411020
C2H2 Zn finger 983..1004 CDD:275368
zf-C2H2 1010..1032 CDD:395048
C2H2 Zn finger 1012..1032 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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