DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-zeta and Lsamp

DIOPT Version :9

Sequence 1:NP_723441.2 Gene:DIP-zeta / 34231 FlyBaseID:FBgn0051708 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:364 Identity:111/364 - (30%)
Similarity:165/364 - (45%) Gaps:52/364 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 NVPTSNLN--------IVVEEPEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFEQSAILT 156
            |.|.:.:|        :.|...:|....:|:||..|....|.|.|::..| ||||::  :|.|:.
  Rat    28 NQPPAEVNLSPITIPGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNS-KVAWLN--RSGIIF 89

  Fly   157 VHNHVITRNPRISVTHDKHDRHRTWY-LHINNVHEEDRGRYMCQINTV-TAKTQFGYLNVVVPPN 219
            ..:...:.:||:.:    ..||...| |.|..|...|.|.|.|.:.|. ..||...||.|.|||.
  Rat    90 AGHDKWSLDPRVEL----EKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPK 150

  Fly   220 IDDSLSSSDVIVREGANISLRCRASGSPRPIIKWKRDDNSRIAINKNHIV---NEWEGDT--LEI 279
            |  |..||||.|.||:|::|.|.|:|.|.|:|.|:            |:.   .|:||:.  |||
  Rat   151 I--SNISSDVTVNEGSNVTLVCMANGRPEPVITWR------------HLTPLGREFEGEEEYLEI 201

  Fly   280 TRISRLDMGAYLCIASNGVPPTVSKRIKVSVDFPPMLLIPHQLVGAPEGFNVTIECFTEAHPTSL 344
            ..|:|...|.|.|.|:|.|.....|::||:|::|| .:...:...|..|...:::|...|.|...
  Rat   202 LGITREQSGKYECKAANEVSSADVKQVKVTVNYPP-TITESKSNEATTGRQASLKCEASAVPAPD 265

  Fly   345 NYWTRGEGPIIHDSHKYKVEATVGLPAYKTHMKLTIINVSSGDDGIYKCVAKNPRGETDGIIRLY 409
            ..|.| :...|:.::..::::|.|      ...||:.||:....|.|.|||.|..|.|:..:.|:
  Rat   266 FEWYR-DDTRINSANGLEIKSTEG------QSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLF 323

  Fly   410 VSYPPTTASSGIYSTDTHWGENGINNNYAYGGPDSTRSI 448
            ....||....        ..|.|...::...||.|.|.|
  Rat   324 KRVLPTVPHP--------IQEIGTTVHFKQKGPGSVRGI 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-zetaNP_723441.2 IG_like 120..216 CDD:214653 32/97 (33%)
Ig 130..200 CDD:143165 22/70 (31%)
I-set 226..310 CDD:254352 34/88 (39%)
IGc2 233..298 CDD:197706 25/69 (36%)
Ig 313..410 CDD:299845 25/96 (26%)
IG_like 325..410 CDD:214653 23/84 (27%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 31/96 (32%)
FR1 55..71 CDD:409353 5/15 (33%)
Ig strand A' 56..62 CDD:409353 3/5 (60%)
Ig strand B 64..72 CDD:409353 2/7 (29%)
CDR1 72..76 CDD:409353 1/3 (33%)
FR2 77..84 CDD:409353 5/9 (56%)
Ig strand C 77..83 CDD:409353 5/6 (83%)
CDR2 85..95 CDD:409353 2/9 (22%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 12/38 (32%)
Ig strand D 100..107 CDD:409353 1/10 (10%)
Ig strand E 110..116 CDD:409353 2/5 (40%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 4/8 (50%)
FR4 138..145 CDD:409353 3/6 (50%)
Ig_3 148..218 CDD:404760 33/83 (40%)
Ig strand A' 155..160 CDD:409353 4/4 (100%)
Ig strand B 166..173 CDD:409353 2/6 (33%)
Ig strand C 179..184 CDD:409353 2/16 (13%)
Ig strand D 190..193 CDD:409353 1/2 (50%)
Ig strand E 197..203 CDD:409353 3/5 (60%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 3/7 (43%)
Ig_3 235..311 CDD:404760 21/83 (25%)
Ig strand B 252..256 CDD:409353 0/3 (0%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 1/3 (33%)
Ig strand F 304..309 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337163
Domainoid 1 1.000 45 1.000 Domainoid score I11853
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 142 1.000 Inparanoid score I4382
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - mtm8971
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X97
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.800

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