DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-zeta and ncam1b

DIOPT Version :10

Sequence 1:NP_723441.2 Gene:DIP-zeta / 34231 FlyBaseID:FBgn0051708 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_009289824.1 Gene:ncam1b / 114442 ZFINID:ZDB-GENE-010822-2 Length:1054 Species:Danio rerio


Alignment Length:512 Identity:109/512 - (21%)
Similarity:171/512 - (33%) Gaps:152/512 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 GGA--------AGNGAGGGGP----VAGSGTGSTVVGSNGVI--------VAGGGANVPTSNLNI 108
            |||        ||.....|.|    :....|.||:...|..:        ||..|.....:.:|:
Zfish    45 GGAKEIDWFAPAGEKIEPGRPDISVIRNDETSSTLTIYNAKVDNAGTYRCVASSGDQDAEATVNL 109

  Fly   109 ----------VVEEPEFTEYIENVTVPAGRNVKLGCSVKN------LGSYKVAWMHFEQSAILTV 157
                      |....||||         |.|..:.|.|.:      |..||.|.:.|        
Zfish   110 KIYQKITFTNVPSPQEFTE---------GDNAIIVCDVISSPPPTVLWKYKGAKIQF-------- 157

  Fly   158 HNHVITRNPRISVTHDKHDRHRTW---YLHINNVHEEDRGRYMCQINTVTAKTQFGYLNVVVPPN 219
                           ||..|.:|.   :|.|..:.:.|.|.|.|: ..:.|:.:..:.::.|..|
Zfish   158 ---------------DKDVRFKTLSNNHLQIRGIRKTDEGVYTCE-GRIKARGEVDFRSIKVVVN 206

  Fly   220 IDDSL----SSSDVIVREGANISLRCRASGSPRPIIKWKRDDNSRIAINKNHIVNEWEGDTLEIT 280
            :..::    :.::.....|.:..|.|...|.|.||:.|:| :|:.:.....:..|| :|..:.:.
Zfish   207 VLPTIRIRQAETNATADMGFSTLLACDPDGFPEPIVTWRR-NNAPLESGNKYSFNE-DGSEMTVL 269

  Fly   281 RISRLDMGAYLCIASNGVPPTVSKRIKVSVDFPPMLLIPHQLVGAPEGFNVTIECFTEAHPTSLN 345
            .:::||.|.|.|||.|....: .:.:.:.|...|.:..............||:.|.....||...
Zfish   270 DVTKLDEGDYTCIAKNKAGES-EQELSLKVFVQPKITYLESQTTTEMDEQVTLTCEATGDPTPTI 333

  Fly   346 YW-------TRGE----------------------GPIIHDSHKYKVEATVGLPAYKTHMKLTII 381
            .|       |.||                      |.::..|.......|:..|.|.        
Zfish   334 TWSFGTRVFTEGEQEQQKRIYQASWTRPEQHKGPDGEVLVRSDARVSSLTLKYPQYT-------- 390

  Fly   382 NVSSGDDGIYKCVAKNPRGETDGIIRLYVSYPPTTASS-GIYSTDTH------------------ 427
                 |.|.|.|.|:|..|||...:.|.|.|.|....| .:|:.:.:                  
Zfish   391 -----DAGQYLCTARNAIGETVQPVSLEVRYAPKILGSVAVYTWEGNPANISCEVLAHPSDVSIT 450

  Fly   428 WGENGI---NNNYAYGGPDSTRSIYAQDKNTRYQSNL--------NEIGLSEQKSFL 473
            |..:|.   |.|.:.....:|.|....:.|...||:.        |||| :|.:.|:
Zfish   451 WLRDGFQLPNANTSNIKIHNTPSASYLEVNPESQSDFGNYNCTTSNEIG-TESREFI 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-zetaNP_723441.2 IG_like 120..216 CDD:214653 20/104 (19%)
Ig strand B 130..134 CDD:409405 0/3 (0%)
Ig strand C 143..147 CDD:409405 2/3 (67%)
Ig strand E 178..185 CDD:409405 2/9 (22%)
IgI_1_MuSK 218..310 CDD:409562 22/95 (23%)
Ig strand A 218..221 CDD:409562 1/2 (50%)
Ig strand A' 226..231 CDD:409562 0/4 (0%)
Ig strand B 237..244 CDD:409562 2/6 (33%)
Ig strand C 250..255 CDD:409562 2/4 (50%)
Ig strand C' 257..259 CDD:409562 0/1 (0%)
Ig strand D 267..270 CDD:409562 0/2 (0%)
Ig strand E 275..281 CDD:409562 0/5 (0%)
Ig strand F 288..295 CDD:409562 4/6 (67%)
Ig strand G 302..310 CDD:409562 0/7 (0%)
IG_like 325..410 CDD:214653 24/113 (21%)
Ig strand B 331..335 CDD:143207 2/3 (67%)
Ig strand C 344..348 CDD:143207 1/10 (10%)
Ig strand E 376..380 CDD:143207 0/3 (0%)
Ig strand F 390..395 CDD:143207 2/4 (50%)
Ig strand G 403..406 CDD:143207 0/2 (0%)
ncam1bXP_009289824.1 Ig 20..113 CDD:472250 15/67 (22%)
Ig strand B 37..41 CDD:409353
Ig strand C 49..53 CDD:409353 0/3 (0%)
Ig strand E 77..81 CDD:409353 2/3 (67%)
Ig strand F 91..96 CDD:409353 0/4 (0%)
Ig strand G 104..107 CDD:409353 0/2 (0%)
Ig 117..186 CDD:472250 23/100 (23%)
Ig strand B 132..136 CDD:409353 0/3 (0%)
Ig strand C 145..149 CDD:409353 1/3 (33%)
Ig strand E 169..173 CDD:409353 1/3 (33%)
Ig strand F 183..188 CDD:409353 2/5 (40%)
Ig strand G 198..201 CDD:409353 0/2 (0%)
Ig 208..301 CDD:472250 22/95 (23%)
Ig strand B 228..232 CDD:409353 1/3 (33%)
Ig strand C 241..245 CDD:409353 1/3 (33%)
Ig strand E 264..268 CDD:409353 0/3 (0%)
Ig strand F 278..283 CDD:409353 2/4 (50%)
Ig strand G 291..294 CDD:409353 0/2 (0%)
Ig 300..414 CDD:472250 25/126 (20%)
Ig strand B 319..323 CDD:409353 2/3 (67%)
Ig strand C 332..336 CDD:409353 0/3 (0%)
Ig strand E 380..384 CDD:409353 0/3 (0%)
Ig strand F 394..399 CDD:409353 2/4 (50%)
Ig strand G 407..410 CDD:409353 0/2 (0%)
IG_like 426..505 CDD:214653 15/79 (19%)
Ig strand B 434..438 CDD:409353 0/3 (0%)
Ig strand C 448..452 CDD:409353 0/3 (0%)
Ig strand E 475..479 CDD:409353 0/3 (0%)
Ig strand F 489..494 CDD:409353 0/4 (0%)
FN3 513..606 CDD:238020
fn3 642..712 CDD:394996
Blue background indicates that the domain is not in the aligned region.

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