DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManVI and Man2b2

DIOPT Version :9

Sequence 1:NP_609253.1 Gene:LManVI / 34206 FlyBaseID:FBgn0032069 Length:1007 Species:Drosophila melanogaster
Sequence 2:NP_001128443.2 Gene:Man2b2 / 360955 RGDID:1308840 Length:1004 Species:Rattus norvegicus


Alignment Length:1147 Identity:309/1147 - (26%)
Similarity:478/1147 - (41%) Gaps:296/1147 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GIVLFVALLA-------ISVRPSEEACGYEACPKTKTNMINIHMVPHSHDDVGWLKTVDQYFYGH 63
            |::.::.||.       ::.||        |.|      |...:|||||.||||:.||.:....:
  Rat     2 GLLRWLPLLGQLLLLWPLAARP--------ASP------IRAFVVPHSHMDVGWVYTVQESMRAY 52

  Fly    64 RSNIQHAGVQYIIDTVIAELIKDPARRFIQVETSFFAKWW-AEQSETAKQVVRKLVNEGRLEFTG 127
            .:|        :..||:.||::...||||.||..||..|| ...||..||.||:|::||||||..
  Rat    53 AAN--------VYTTVVEELVRGRQRRFIAVEQEFFRLWWDGVASEQQKQQVRQLLDEGRLEFVL 109

  Fly   128 GAWSMNDEAAVNYQSVIDQFTLGLKFLDDTFGSCARPRIGWQIDPFGHSREQASIFAQMGYDGEF 192
            |...|:|||..:....|.|.|.|..||.:|||  .||:..|.:||||.|....::||..|::...
  Rat   110 GGQVMHDEAVTHLDDQILQLTEGHGFLYETFG--IRPQFSWHVDPFGASATTPTLFALAGFNAHL 172

  Fly   193 FARMDHRDKNDRIDNLGMEMIWDASDSLS-NDEIFTGL--LYRHYSAPPGYCFDVHCG------- 247
            .:|:|:..|:...:..|::.:|..|.||| ..||:|.:  || .|..|....|....|       
  Rat   173 ISRIDYDLKDAMQEAQGLQFVWHGSPSLSEQQEIYTHVMDLY-SYCTPSHIPFSNRSGFYWNGVA 236

  Fly   248 --------------DDPIIDTKSYDN----------NVKSRVDDFLSYVTSVAQHYRSNHIMIPM 288
                          .:|:    :.||          |||.|           |..:|:.|::.|.
  Rat   237 VFPEPPPDGVYPNMSEPV----TVDNIHLYAEALVANVKQR-----------AAWFRTPHVLWPW 286

  Fly   289 GDDFQYEDAQVNFKNMDKLIKYVNERQAEGSTFNLFYSTPACYLNSLHEGLQTWPNKT-QDFFPY 352
            |.|.|:.:|.|.|.|||.|::|:|.|.|:.. .::.|:|...|..:||:...||..:. .||.||
  Rat   287 GCDKQFFNASVQFDNMDPLLEYINNRSAQFG-ISVQYATLNDYFQALHDFNVTWDIRDHHDFLPY 350

  Fly   353 GSDDNSYWTGYFTSRPTQKRFERDGNHILQVAKQLSVFAE---------LNTKQQKEDLEYLREI 408
            .|:....|||:||||.|.|...|..:.:|...:  |:|..         |:.....:.|:.||..
  Rat   351 SSEPQQAWTGFFTSRSTLKGLARQASALLYAGE--SMFTRYMWPHPRGTLDPTWALQQLQQLRWA 413

  Fly   409 MGVMQHHDAITGTEKQHVSDDYDRILYDAILGGVNTARDGLRKL-----TNLPNGEFESCLQLNI 468
            :..:||||||||||...|.:.|        :..::....|:.||     .:.|.|.......:..
  Rat   414 VSEVQHHDAITGTESPKVKNMY--------MEHLSMGMRGVHKLMASIALDRPPGSGTDTRPVGY 470

  Fly   469 SECAFTKDDADNVVVTLYNPLAHTSTQYVRVPVKNENYEVTDEKGRVVASEVVPVAWQVLALEFR 533
            |             .::|||||...|..:.:.|...:..||||.||.|::::             
  Rat   471 S-------------ASVYNPLAWKITTIITLTVAFPSVSVTDELGRPVSAQI------------- 509

  Fly   534 NNDTQ----HELVFKASVDKIA--NYYIKKVASQETKNVAAHTKSKRSIKAEEANLEVPKRFKKV 592
            .|.|:    ::|:...::..::  :|.:::     |:...|.|   |.:....||     ..|..
  Rat   510 QNSTKDPSAYDLLILTTIPGLSYRHYKVRR-----TRGDQAGT---RELVTPRAN-----TLKFS 561

  Fly   593 HSLKNATETFDDDEGETVVQTSQ--VKLVIDNKTGLLKTVE--MNGVSENIDQSYGVYRTYD--- 650
            ..|:|.|    ..||:.:|....  ..|:.|..|.:|.:::  .:..:.::.|.:..||...   
  Rat   562 RKLRNQT----SQEGKLLVPVMNDCYTLLFDQDTNMLHSIQDRQSNRTVHMTQEFLEYRANGDVK 622

  Fly   651 ----SGAYVFRQYHQADFIVQYEGVEFTVYDGALVKEVHQQFSEYISQVIRIYE----------- 700
                |..|:|.....|:...:..|:|..|  |.|..:|.|.|...|:....||.           
  Rat   623 QGPISDNYLFASNDTAEPSWEAVGMEMVV--GTLATDVRQYFYRNITDQGYIYSIHTRLAHVHPS 685

  Fly   701 --GKNL---VEIEWQVGPIEREEEFGREVVIIFNSTIASDGVSYTDSNGREMIKRVKDQRETFTP 760
              |:.|   :|.::||||:    :..||.::..:|.:.|..|.|:|:||.:|      ||..: .
  Rat   686 LAGELLCRRIEQQYQVGPL----DLNREAILRTSSDLNSQQVLYSDNNGYQM------QRRPY-K 739

  Fly   761 GLDRQPTAANYYPVTSRIALQDSKKRIAVLNDRAQGGASMLNGQLELMLHRR----LVRDDGYGV 821
            .....|...||||:.....::|.|.|:.:|.:|..|.:|..|||:|:|||||    ||.|..|.:
  Rat   740 AFKSNPIPRNYYPMVQSAFIEDDKSRLVLLAERPHGVSSQENGQVEVMLHRRLWNNLVWDLNYNL 804

  Fly   822 GEALNEEKYGQPMIARGKVYLILSPSDESTAAE-------------------REAEKEIH----- 862
              .||:.....|::     :|:|.|...:||..                   .|.|..||     
  Rat   805 --TLNDTSVVHPVL-----WLLLGPKSTTTALRPRSGVALQHRPVVLLKELTDEEETAIHRPHHP 862

  Fly   863 ---------------LPFWKFFSKNTGSTTAAAKSVPSFNDFPKSVHLLTLE-------PFNDDE 905
                           ||.|: :|:|                  .:.||..|:       ..|...
  Rat   863 WPVTLPPSLHLQVLSLPGWQ-YSRN------------------HAQHLKNLQRGHPEKPQVNLQR 908

  Fly   906 VLLRVENFLDHTEGQVVSFNIRP----IFDYLNG----VEIRETTLDGNLPLSDMKRFKFHHDSS 962
            ||||:.:..:..|..|:|   ||    :...|.|    |.:.|.:|.|...:..::|:.: ....
  Rat   909 VLLRLHHLYEAGEDPVLS---RPATVDLKIALRGLGSVVAVEERSLTGTWDVQTLQRWHW-RTKI 969

  Fly   963 GQKPDAVEYFTSAHKPLAAEQSQEASEFSVTLHPMQIRTFII 1004
            ||        ...| |.:..:|...|  .:|::|.:||||.|
  Rat   970 GQ--------LKGH-PTSPPRSPGGS--IITVYPKEIRTFFI 1000

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManVINP_609253.1 GH38N_AMII_LAM_like 38..312 CDD:212121 105/308 (34%)
Alpha-mann_mid 359..434 CDD:286360 29/83 (35%)
Glyco_hydro_38C 482..1002 CDD:285047 144/610 (24%)
Man2b2NP_001128443.2 PLN02701 27..792 CDD:178304 247/857 (29%)
GH38N_AMII_Epman_like 27..352 CDD:212122 119/351 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D201312at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11607
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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