DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LManVI and aman-3

DIOPT Version :9

Sequence 1:NP_609253.1 Gene:LManVI / 34206 FlyBaseID:FBgn0032069 Length:1007 Species:Drosophila melanogaster
Sequence 2:NP_001361919.1 Gene:aman-3 / 172178 WormBaseID:WBGene00018594 Length:1046 Species:Caenorhabditis elegans


Alignment Length:1047 Identity:249/1047 - (23%)
Similarity:455/1047 - (43%) Gaps:235/1047 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ACPKTKTNMINIHMVPHSHDDVGWLKTVDQYFYGHRSNIQHAGVQYIIDTVIAELIKDPARRFIQ 93
            |..|::|..:.::::|.:|.|.|||:|.::|   .:|..|      |:|.:...::|:...||:.
 Worm   110 ASKKSRTEKLKVYVLPFTHVDPGWLETFERY---TKSTNQ------ILDNMHQFMMKNEKMRFMW 165

  Fly    94 VETSFFAKWWAEQSETAKQVVRKLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFTLGLKFLDDTF 158
            .|..||.:||:.|:|..|:.|:|||.|||||...|:|.|.|||...:...:|....|.:|:...|
 Worm   166 AEFVFFERWWSLQNEQVKEDVKKLVTEGRLELATGSWVMTDEANPYFPVSVDNIVEGFQFIHKNF 230

  Fly   159 GSCARPRIGWQIDPFGHSREQASIFAQMGYDGEFFARMDHRDKNDRIDNLGMEMIW-DASDSLSN 222
            |  .:|:..|..||||:|.....:|.:.|.......|:.|:.|........:...| ...|:...
 Worm   231 G--IKPQTMWSNDPFGYSNSVPYLFKKSGVHRTVINRIHHKLKQTLQSQKAIPFKWRQYFDATGE 293

  Fly   223 DEIFTGLL-YRHYSAPPGYCFDV--HCGDDPII------------------DTKSYDNNVKSRVD 266
            |::.|.:| |.||        |:  .||.|..:                  ..|..:.||.::.:
 Worm   294 DDVLTQILPYTHY--------DILNSCGSDASVCCEFDFKRMTHWSCPGPKPEKITNANVAAKAE 350

  Fly   267 DFLSYVTSVAQHYRSNHIMIPMGDDFQYEDAQVNFKNMDKLIKYVNERQAEGSTFNLFYSTPACY 331
            ..::.:..:::.|::..|::..||||:::..:...:..|..|...:|.. :||...:.:.|...|
 Worm   351 KLVNQLEKMSEMYKAPVILMMHGDDFRFDMIEEWNQQHDNFIPVFDEIN-KGSRVEIRFGTFTDY 414

  Fly   332 LNSLHEGLQTW---------PNKTQDFFPYGSDDNSYWTGYFTSRPTQKR-------FERDGNHI 380
            .|.    |:.|         |..:.|||||......|||||:|:||..||       ..|:|:.:
 Worm   415 FND----LEKWYSNNKDSEPPTVSGDFFPYMCALGDYWTGYYTTRPFFKRQGRLLHSLIRNGDIM 475

  Fly   381 LQVAKQLSVFAELNTKQQK-----EDLEYLREIMGVMQHHDAITGTEKQHVSDDYDRILYDAILG 440
            |.:.:       :|.||:|     :.||..|..:.:.|||||||||.|..|.|:|..:|:.:|: 
 Worm   476 LSMLR-------VNLKQRKIGENVKRLEAARRNLALFQHHDAITGTSKVSVMDNYSELLHASIV- 532

  Fly   441 GVNTARDGLRK-----LTNLPNG-EFESCLQLNISECAFTKDDADNVVVTLYNPLAHTSTQYVRV 499
            ..|...:.|.|     ...:.:| |.::.:.|..||    |:      :.::|......|...::
 Worm   533 STNIVLENLTKSDIDLYPRIHDGIELQTIVDLESSE----KE------IRIFNSHLFEITDVFKI 587

  Fly   500 PVKNENYEVTDEKGRVVASEVVPVAWQVLALEFRNNDTQHE---LVFKASVDKIANYYIK----- 556
            .|| |...:....|:::.:::.|.        |:.:..:.:   |:|:|:|..::...:|     
 Worm   588 RVK-EREVIVSIDGKIIEAQLEPF--------FQKSKVEKDSFLLLFQATVLPLSMMKVKVQRGD 643

  Fly   557 -----KVASQETKN-----------VAAHTKSKRSIKAEEANLEVPKRFKKVHSLKNATETFDDD 605
                 |:|..|.|:           :|:.|.:        .|||.|  :.||.:           
 Worm   644 SGGLTKMAKIEAKDTNAWDLGSSWTIASSTSA--------PNLETP--YFKVSN----------- 687

  Fly   606 EGETVVQTSQVKLVIDNKTGLLKTVEMNGVSEN----IDQSYGVYRTYDSGAYVFRQYHQADFIV 666
                           |..||.:::|  |.:|:|    ..||:..|:....|||:.|.:.....|:
 Worm   688 ---------------DPITGAIQSV--NKLSDNSKFHCQQSFYNYKEAGGGAYLMRLHTNPKEII 735

  Fly   667 QYEGVEFTVYDGALVKEVHQQFSEYISQV-IRIYEGKNLVEIEWQVGPIEREEEFGREVVIIFNS 730
            :|:.::.:   |.|.:.::|:.:..:.:: |...||.:..|::..:. |:..:|...|::..| |
 Worm   736 EYQWLKVS---GPLRQSIYQKSTNVLQRLSIHNVEGPSGEEVDISMS-IDITKERNTELMTRF-S 795

  Fly   731 TIASDGVSYTDSNGREMIKRVKDQRETFTPGLDRQPTAANYYPVTSRIALQDSKKRIAVLNDRAQ 795
            |.....::||||.|.::::|          ...:.|..:||||:.:...||..|:|::::::...
 Worm   796 TKWDKPLTYTDSVGMQLLRR----------DFYKLPVQSNYYPMPTAAVLQSGKQRLSIVSNVEH 850

  Fly   796 GGASMLNGQLELMLHRRLVRDDGYGVG---EALNEEKYGQPMIARGKVYLILSPSD--------- 848
            |...:.:|.:|:.:.|.|.:|||.|:|   :|:..:.  :|:..:.|:......||         
 Worm   851 GARFLESGTVEINIDRILNQDDGKGLGTGPDAIPIDM--KPVDMKFKLIFDSLESDPTENSRYST 913

  Fly   849 ESTAAEREAEKEIHLPFWKFFSKNTGSTTAAAKSVPSFND-----FPKSVHLLTLEPFNDDEVLL 908
            .|..|::..:..|:.|.  .|::    .....:.:....:     ||..:.|||:.|..|::.||
 Worm   914 HSFRAQQAVQTIIYPPM--MFNR----PPKKEEDIEEIEEISNLKFPCDIQLLTVRPLEDNKQLL 972

  Fly   909 ------------RVENFLDHTEGQVVSFNIRPIFDYLNGVEIRETTLDG-----------NLPLS 950
                        :|.|.....:..::...|:     |...::::|.|.|           .||..
 Worm   973 ILYRHATVCSSQKVGNCGGELKSSLMDLLIK-----LGAKQVQKTDLSGVTRVGGIIKVEYLPDY 1032

  Fly   951 DMKRFKF 957
            ::|.|.|
 Worm  1033 ELKTFDF 1039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LManVINP_609253.1 GH38N_AMII_LAM_like 38..312 CDD:212121 78/295 (26%)
Alpha-mann_mid 359..434 CDD:286360 33/86 (38%)
Glyco_hydro_38C 482..1002 CDD:285047 110/545 (20%)
aman-3NP_001361919.1 PLN02701 117..978 CDD:178304 234/972 (24%)
GH38N_AMII_GMII_SfManIII_like 118..452 CDD:212120 96/357 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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