DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bace and Bace2

DIOPT Version :10

Sequence 1:NP_609235.1 Gene:Bace / 34182 FlyBaseID:FBgn0032049 Length:372 Species:Drosophila melanogaster
Sequence 2:NP_001002802.1 Gene:Bace2 / 288227 RGDID:1303241 Length:514 Species:Rattus norvegicus


Alignment Length:435 Identity:120/435 - (27%)
Similarity:178/435 - (40%) Gaps:91/435 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VLLAALASAELHRVPILKEQNFVKTRQNVLAEKSYLRTKYQL--PSLRSVD-------------- 57
            :||..||...|..||:|....|....|...|......|...|  |.|...|              
  Rat     8 LLLPLLAQWLLRAVPVLAPAPFTLPLQVAGAANHRASTVPGLGTPELPRADGLALALEPARATAN 72

  Fly    58 ----EEQLSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTCKSDACLTHN----QYDSS 114
                .:.|.......||..:.||||.|..::|.|:||||..|        |...|:    .:||.
  Rat    73 FLAMVDNLQGDSGRGYYLEMLIGTPPQKVRILVDTGSSNFAV--------AGAPHSYIDTYFDSE 129

  Fly   115 ASSTYVANGESFSIQYGTGSLTGYLSTDTVDV-----NGLSIQSQTFAESTN--EPGTNFNDANF 172
            :||||.:.|...:::|..||.||::..|.|.:     :...:...|..||.|  .||..:|    
  Rat   130 SSSTYHSKGFEVTVKYTQGSWTGFVGEDLVTIPKGFNSSFLVNIATIFESENFFLPGIKWN---- 190

  Fly   173 DGILGMAYESLA--VDGVAPPFYNMVSQGLVDNSVFSFY-----LARDGTSTMGGELIFGGSDAS 230
             ||||:||.:||  ...:...|.::|:|..:.: :||..     |...|:.|.||.|:.||.:.|
  Rat   191 -GILGLAYAALAKPSSSLETFFDSLVAQAKIPD-IFSMQMCGAGLPVAGSGTNGGSLVLGGIEPS 253

  Fly   231 LYSGALTYVPISEQGYWQFTMAGSSIDGYSLCDDC------QAIADTGTSLIVAPYNAY------ 283
            ||.|.:.|.||.|:.|:|..:....|.|.||..||      :||.|:||:|:..|...:      
  Rat   254 LYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEA 318

  Fly   284 ITLSEILNVGEDGY-----LDCSSVSS-----LPDVTFNIGGTN------FVLKPSAYIIQSDGN 332
            :..:.::....||:     |.|.:.|.     .|.::..:...|      ..:.|..||....| 
  Rat   319 VARTSLIPEFSDGFWTGAQLACWTNSETPWAYFPKISIYLRDENASRSFRITILPQLYIQPMMG- 382

  Fly   333 CMSAFEY--------MGTDFWILGDVFIGQYYTEFDLGNNRIGFA 369
              :.|.|        ..|:..::|...:..:|..||....|:|||
  Rat   383 --AGFNYECYRFGISSSTNALVIGATVMEGFYVVFDRAQRRVGFA 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BaceNP_609235.1 pepsin_retropepsin_like 59..369 CDD:472175 102/363 (28%)
Bace2NP_001002802.1 beta_secretase_like 85..446 CDD:133140 103/358 (29%)

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