DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bace and Ctse

DIOPT Version :10

Sequence 1:NP_609235.1 Gene:Bace / 34182 FlyBaseID:FBgn0032049 Length:372 Species:Drosophila melanogaster
Sequence 2:NP_001388196.1 Gene:Ctse / 25424 RGDID:2446 Length:398 Species:Rattus norvegicus


Alignment Length:391 Identity:176/391 - (45%)
Similarity:240/391 - (61%) Gaps:27/391 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IAVVVLLAALASAE--LHRVPILKEQNFVK--TRQNVLAE--KSYLRTKYQLPSLRSVDE---EQ 60
            :.:::||..||.|:  |||||:.:.|:..|  ..|..|::  :|:.....:.....:||:   |.
  Rat     7 LLLLLLLLDLAQAQGVLHRVPLRRHQSLRKKLRAQGQLSDFWRSHNLDMIEFSESCNVDKGINEP 71

  Fly    61 LSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTCKSDACLTHNQYDSSASSTYVANGES 125
            |.|.::|.|:|.:|||:|:|:|.|:||:|||||||||..|.|.||..|..:..|.||||:..|..
  Rat    72 LINYLDMEYFGTVSIGSPSQNFTVIFDTGSSNLWVPSVYCTSPACKAHPVFHPSQSSTYMEVGNH 136

  Fly   126 FSIQYGTGSLTGYLSTDTVDVNGLSIQSQTFAESTNEPGTNFNDANFDGILGMAYESLAVDGVAP 190
            ||||||||||||.:..|.|.|.||:::.|.|.||..|||..|.:|.||||||:.|.||||.||.|
  Rat   137 FSIQYGTGSLTGIIGADQVSVEGLTVEGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAVGGVTP 201

  Fly   191 PFYNMVSQGLVDNSVFSFYLARDGTSTMGGELIFGGSDASLYSGALTYVPISEQGYWQFTMAGSS 255
            .|.||::|.||...:||.||:.|.....|.||.|||.|.|.:||:|.::|:::|||||..:.|..
  Rat   202 VFDNMMAQNLVALPMFSVYLSSDPQGGSGSELTFGGYDPSHFSGSLNWIPVTKQGYWQIALDGIQ 266

  Fly   256 I-DGYSLCDD-CQAIADTGTSLIVAPYNAYITLSEILNVGE-DG--YLDCSSVSSLPDVTFNIGG 315
            : |....|.: ||||.|||||||..|......|.|.:.... ||  .:||::::.:|:|||.|.|
  Rat   267 VGDTVMFCSEGCQAIVDTGTSLITGPPKKIKQLQEAIGATPMDGEYAVDCATLNMMPNVTFLING 331

  Fly   316 TNFVLKPSAYIIQS--DGN--CMSAFEYMGTD-------FWILGDVFIGQYYTEFDLGNNRIGFA 369
            .::.|.|:|||:..  ||.  |.|.|:  |.|       .||||||||.::|:.||.|||::|.|
  Rat   332 VSYTLSPTAYILPDLVDGMQFCGSGFQ--GLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLA 394

  Fly   370 P 370
            |
  Rat   395 P 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BaceNP_609235.1 pepsin_retropepsin_like 59..369 CDD:472175 157/325 (48%)
CtseNP_001388196.1 A1_Propeptide 25..51 CDD:462326 7/25 (28%)
pepsin_retropepsin_like 80..395 CDD:472175 153/316 (48%)

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