DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13088 and Skp2

DIOPT Version :10

Sequence 1:NP_609234.2 Gene:CG13088 / 34180 FlyBaseID:FBgn0032047 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster


Alignment Length:355 Identity:73/355 - (20%)
Similarity:127/355 - (35%) Gaps:109/355 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EQINEDVWIDILKYLPMRDQLSLVEVNENISAYVKYH--WSHLK--TVTLTREDLDFLDRNNKLM 62
            |::::::.:||.|:||.:..|.:..|....:...:..  |:.|.  ..|:....|:.:.|...| 
  Fly   240 ERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRRGVL- 303

  Fly    63 HECLGGWSATVERLNLQSASSDLLRKWTEYDFPHLRSLDCHMDYNLEEADEETLLLTELFPLLTR 127
                      |.||...|........:||.....|:.||                       |:.
  Fly   304 ----------VIRLAQTSIQEPAFAPYTEVFRTRLQYLD-----------------------LSM 335

  Fly   128 LSLNSSTTGRYLWHWKQLRELNLTWCEYLDPDHFEEIFGN--LQLTKLTMLYYGYNVNLGEKVVD 190
            .|:..|:....|.|.:||::::|...| ||.|...||..|  |:...|||. .|...|....:::
  Fly   336 ASITRSSLLTLLSHCRQLKKISLENIE-LDDDICAEIAKNEALEAVNLTMA-SGLTSNSVRLMME 398

  Fly   191 ITRCTTLEELHIDDHHLLGDFLPRL----------MNLPHFRRLAFYTRDYYEYLLGSVARHKPL 245
              ..|:|..|:|....|..|.:..|          :|:...||:.|                   
  Fly   399 --SLTSLSSLNISWTDLSADAVTALVTHISPNLIRLNIAGCRRVLF------------------- 442

  Fly   246 KVQSLLFNDSFWSSERVAGSILHMTNLRRLVLQEDDIDAQQLHTICHKL-PNLEELHLLAMREVP 309
                    ||            |:..|::...|..::|...    |:.| |.:    :.|:.:..
  Fly   443 --------DS------------HVATLQKRCPQLLELDLSD----CNSLTPTV----ITAIMKFK 479

  Fly   310 SPSHLWNSIGHCHLLRILNLSSTKLVDLRS 339
            ...:|  |:..|:|     :.:||.::|:|
  Fly   480 MLEYL--SVSRCYL-----IPATKFIELKS 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13088NP_609234.2 None
Skp2NP_730815.2 F-box_DmSKP2-like 239..281 CDD:438920 9/40 (23%)
leucine-rich repeat 302..327 CDD:275381 7/35 (20%)
AMN1 309..480 CDD:187754 48/244 (20%)
leucine-rich repeat 328..352 CDD:275381 8/46 (17%)
leucine-rich repeat 353..376 CDD:275381 9/23 (39%)
leucine-rich repeat 377..402 CDD:275381 6/27 (22%)
leucine-rich repeat 403..428 CDD:275381 6/24 (25%)
leucine-rich repeat 429..455 CDD:275381 8/64 (13%)
leucine-rich repeat 456..480 CDD:275381 5/31 (16%)
leucine-rich repeat 481..500 CDD:275381 6/25 (24%)
leucine-rich repeat 506..529 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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