DRSC/TRiP Functional Genomics Resources

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Protein Alignment emb and Xpo5

DIOPT Version :9

Sequence 1:NP_001303316.1 Gene:emb / 34167 FlyBaseID:FBgn0020497 Length:1063 Species:Drosophila melanogaster
Sequence 2:NP_082474.1 Gene:Xpo5 / 72322 MGIID:1913789 Length:1204 Species:Mus musculus


Alignment Length:1075 Identity:201/1075 - (18%)
Similarity:365/1075 - (33%) Gaps:327/1075 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 ILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCEGIKKYVVSLIIKTSSDPIVMEQNKVYLNKL 127
            :.|.:|....:.:.|||||.|:|.||..:.|.:...:|..|:.| |...:..|:.|:|.: .:.|
Mouse    54 LAEKTQIAIVRHFGLQILEHVVKFRWNSMSRLEKVYLKNSVMEL-IANGTLRILEEENHI-KDVL 116

  Fly   128 NMILVHILKREWPRNWETFISDIVGASKTNESLCMNNMVILKNLSEEVFDFS------QGQITQT 186
            :.|:|.::|||||::|...:.::....:..|:.....|.||..|:|:|..|.      :..|.||
Mouse   117 SRIVVEMIKREWPQHWPDMLMELDTLFRQGETQRELVMFILLRLAEDVVTFQTLPTQRRRDIQQT 181

  Fly   187 KAKHLKDTM----------CSEFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIF-- 239
            ..::::..:          .:::.|:.|..|...|...|..:....|.||..:::|:.|.:|.  
Mouse   182 LTQNMERILNFLLNTLQENVNKYQQMKTDSSQEAEAQANCRVSVAALNTLAGYIDWVSLNHITAE 246

  Fly   240 ETQQIETLIFKFLSVPMFRNVTLKCLSEIAGLTAANYDENFATLFKDTMVQLEQIVGQNMNMNHV 304
            ..:.:|||                ||.                                  :|  
Mouse   247 NCKLVETL----------------CLL----------------------------------LN-- 259

  Fly   305 FKHGSDTEQELVLNLAMFLCTFLKEHGKLVEDAKYVDYL--NQALMYLVMISEVED----VEVFK 363
                   ||||.|..|..|...:...||| ||.|.:..|  :.|:.|::..::..|    ||...
Mouse   260 -------EQELQLGAAECLLIAVSRKGKL-EDRKRLMILFGDVAMHYILSAAQTADGGGLVEKHY 316

  Fly   364 ICLE-------------------------------YWNS-LVEDLYNSEFF----HPTLESTKRQ 392
            :.|:                               |..| |....:.|:|.    |.|..:..|.
Mouse   317 LFLKRLCQVLCALGNLLCALLALDANIQTPINFGMYLESFLAFTTHPSQFLRSSTHMTWGALFRH 381

  Fly   393 QVYPRRRFYAPILSKVRFIMISRMAKPEEVLVVENENGEVVR-EFMKDTNSINLYKNMR----ET 452
            :|..|......::.|.....::.:.|.......::.:.|..| :|..|.:....:.:.|    |.
Mouse   382 EVLSRDPALLAVIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQHGEV 446

  Fly   453 LVFLTHLDSVDTDRIMTLKLLNQVNGSEFSWKNLNT----LCWAIGSISGAFCE---------ED 504
            :..:..||...:.::....|..|::.|      ::|    .|...|:..|.||.         |.
Mouse   447 VRCVCRLDPKTSFQMAAEWLKYQLSAS------IDTGPVNSCSTAGTGEGGFCSIFSPSYVQWEA 505

  Fly   505 EKRFLVTVIK-----------------DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWK 552
            ...||.:||.                 :||.|....:.||  .::.|.::..|.....|:.....
Mouse   506 MTFFLESVINQMFRTLDKEELPVSDGIELLQLVLNFEIKD--PLVLSCVLTNVSALFPFVTYKPA 568

  Fly   553 FLKTVVNKLFEFMHETHDGVQDM--------------ACDTFIKIAIKCRRYFVTIQPNEACTFI 603
            ||..|.:|||.|:  |.:.|.:.              ||.:..|:   ||.|...:.||     .
Mouse   569 FLPQVFSKLFSFV--TFESVGESKAPRTRAVRNVRRHACSSINKM---CRDYPDLVLPN-----F 623

  Fly   604 DEILTTMSSIICD---LQPQQVHTFYEAVGYMISAQVDQVQQDVLIERYMQLPNQVW-DDIISRA 664
            |.:.:.:..::.:   |...:.....||:..:.:...|..:|.:.:|..|.....:| .:.:.||
Mouse   624 DMLYSHVKQLLSNELLLTQMEKCALMEALVLVSNQFKDYERQKLFLEELMAPVVNIWLSEEMCRA 688

  Fly   665 SKNVDFLKNMTAVKQLGSILKTNVAACK---ALGHAYVIQLGRIYLDMLNVYKITS-----ENII 721
            ..::|     :.:..:|:.||:...|.:   .|..|   ::......:|.|.:.||     |...
Mouse   689 LSDID-----SFIAYVGADLKSCDPAVEDPCGLNRA---RMSFCVYSILGVMRRTSWPSDLEEAK 745

  Fly   722 QAIEVNGVNVNNQPLIKTMHVVKKETLNLISEWVSRSNDNQLVMDNFIPPLLDAILLDYQRCKVP 786
            ....|.|...:..|:.:          |..:|.:.|..||.|.:                     
Mouse   746 AGGFVVGYTPSGNPIFR----------NPCTEQILRLLDNLLAL--------------------- 779

  Fly   787 SAREPKVLSAMAIIVHKLRQHITNEVPKIFDAV---FECTLDMINK-------------NFEDFP 835
                             :|.|.|...|::...:   |...||::..             .|.|.|
Mouse   780 -----------------VRTHNTLYTPEMLTKMAEPFTKALDIVESEKTAILGLPQPLLEFNDHP 827

  Fly   836 QHRLS------FYELLQAVNAHCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNILFKML 894
            .:|.:      |:.:|.   .:|:.......|            :.:.....|.|:...:|....
Mouse   828 VYRTTLERMQRFFGILY---ENCYHILGKAGP------------SMQQDFYTVEDLASQLLGSAF 877

  Fly   895 QNLDQHPG-----------------AAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYM 942
            .||:..|.                 .....|:|..:.||..:|:.:           | :.|:..
Mouse   878 VNLNNIPDFRLRSMLRVFVKPLVLFCPSEHYETLISPILGPLFTYL-----------H-MRLSQK 930

  Fly   943 FSLVENRKITVNLGPI----PDNMIFIQEYVASLL 973
            :.::..|.|......|    |::...::|.:..:|
Mouse   931 WHVINQRSILCGEDEIAEDNPESQEMLEEQLVRML 965

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
embNP_001303316.1 CRM1 13..1023 CDD:227432 201/1075 (19%)
IBN_N 43..109 CDD:197981 15/45 (33%)
Xpo1 120..265 CDD:285575 35/162 (22%)
CRM1_C 701..1015 CDD:285920 48/321 (15%)
Xpo5NP_082474.1 Necessary for interaction with Ran. /evidence=ECO:0000250|UniProtKB:Q9HAV4 1..108 17/54 (31%)
IBN_N 33..100 CDD:197981 16/46 (35%)
Xpo1 109..271 CDD:285575 44/221 (20%)
Necessary for interaction with ILF3. /evidence=ECO:0000250|UniProtKB:Q9HAV4 533..640 26/118 (22%)