DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG8086 and NUP49

Sequence 1:NP_001260237.1 Gene:CG8086 FlyBaseID:FBgn0032010 Length:1603 Species:Drosophila melanogaster
Sequence 2:NP_011343.1 Gene:NUP49 SGDID:S000003140 Length:472 Species:Saccharomyces cerevisiae

Alignment Length:259 Identity:51/260 (20%)
Similarity:89/260 (34%) Gaps:85/260 (33%)


  Fly  1368 LHSTPAYSFGTKSDIRVTTDAPAPGHYHPEQCKLDSSPAYS---FGLKTVPTASLPEPRGAYIED 1429
            :::..|..||:|         ||.|..........|:||.:   ||.|         |.|     
Yeast   142 MNNASAGLFGSK---------PAGGTSLFGNTSTSSAPAQNQGMFGAK---------PAG----- 183

  Fly  1430 RIVQRRERRLASPVRNNAECTTT-----------------TTNHTNNNAGSSTTTTTTTTTTTKT 1477
                      .|...|||..|||                 ::|:.|||..|:...:.:..     
Yeast   184 ----------TSLFGNNAGNTTTGGGLFGSKPTGATSLFGSSNNNNNNNNSNNIMSASGG----- 233

  Fly  1478 FINGVEQPELQKKETTKQVNGTHKELKSAPQAPLSNGNIVSNGNHSKMVSTTTRIQEV-AHGQKE 1541
             :.|.:|.:||::   .|:....:.|...|..|:                  |||.|: ...::|
Yeast   234 -LFGNQQQQLQQQ---PQMQCALQNLSQLPITPM------------------TRISELPPQIRQE 276

  Fly  1542 SGNL-KVVASGKSDASATKAAAVSHQTVVQA---DGAIVTSGQSSRMQTVKYAVEASSVQEKII 1601
            ...| :.:......:...||..:.|..::.:   |.|.:...:|:..|.:|..::..|..:.:|
Yeast   277 IEQLDQYIQKQVQISHHLKADTIDHDELIDSIPRDVAYLLKSESATSQYLKQDLKKISSFKSLI 340

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG8086NP_001260237.1 None
NUP49NP_011343.1 Nucleoporin_FG 5..117 CDD:290362
Nucleoporin_FG 90..178 CDD:290362 11/45 (24%)
V_Alix_like <267..465 CDD:187408 13/75 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R852
TreeFam 00.000 Not matched by this tool.
11.030

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