DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wwox and rdh12l

DIOPT Version :10

Sequence 1:NP_609171.1 Gene:Wwox / 34090 FlyBaseID:FBgn0031972 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001009912.2 Gene:rdh12l / 494176 ZFINID:ZDB-GENE-040801-48 Length:297 Species:Danio rerio


Alignment Length:310 Identity:118/310 - (38%)
Similarity:169/310 - (54%) Gaps:38/310 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 VRQRFDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIER 164
            :|..|.|.|:|.:      |.|:|.||||||.|||.|||..||..|..||.|||:...||||::.
Zfish     4 MRNMFCSWSSAAR------LDGKTVLITGANTGIGKETAIDLAKRGARIIMACRDMEKAEAALKE 62

  Fly   165 IAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQ 229
            :...  :.......::||||..:|::.|.|:|.:....::.||.||||...||.:|.||.|....
Zfish    63 VKDS--SGNQDVFISSLDLSDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGKTADGFEMQIG 125

  Fly   230 VSHLSHFYLTLQLETLF--DYKTRIIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAK 292
            |:|:.||.||..|..|.  ....|||.:||.:|::..:.:|::      ...:.|....||..:|
Zfish   126 VNHMGHFLLTYLLLDLIKRSAPARIINVSSTAHQWGTINLEDI------NSEKNYDKQKAYCQSK 184

  Fly   293 LCNVLFAQELAQRWKQRGISVFSLHPGNMVSSDLSRN--------YWFYRLLFAIVRPFTKSLQQ 349
            |.||||.:.||:|.:..|::.:||||| :|.:||.|:        .||       .:||||:..|
Zfish   185 LANVLFTRSLAKRLEGTGVTAYSLHPG-VVQTDLWRHLSKPQQAVMWF-------TKPFTKTSVQ 241

  Fly   350 AAATSIYCATANELTGLSGLYFNNCFFCEPSKLSKSA---ALQQQLWKLS 396
            .|.||||||...||...||.|:::   |.|:|.:|:|   .:.|:||:||
Zfish   242 GAQTSIYCAVDPELQTESGKYYSD---CAPAKAAKAAMDDEVAQRLWELS 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WwoxNP_609171.1 WW 13..43 CDD:197736
human_WWOX_like_SDR_c-like 121..402 CDD:187669 112/289 (39%)
rdh12lNP_001009912.2 Rossmann-fold NAD(P)(+)-binding proteins 19..288 CDD:473865 110/287 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.