DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB1 and si:ch211-158d24.2

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_689297.6 Gene:si:ch211-158d24.2 / 560805 ZFINID:ZDB-GENE-081105-115 Length:548 Species:Danio rerio


Alignment Length:306 Identity:105/306 - (34%)
Similarity:147/306 - (48%) Gaps:23/306 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   788 MCNCNPTG-SLSKVCESNGGYCQCKPNVVGRQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYCDL 851
            :|||:..| |....|:...|.|.|.|...|.||::|....:..|..||..|.|:|.|:....|| 
Zfish   151 VCNCSGEGVSDPDECDRKTGQCDCMPGYTGLQCEECEEDHFTNGTIGCLPCACDSFGAHGTSCD- 214

  Fly   852 ITGQCQCVPNTYGRECNQCQPGYWNFPE--CRVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSC 914
            .:|.|.|....||.:|:.|.||:::|..  |:.||||.|:..|.|..|.|:||||:|.|::|:.|
Zfish   215 SSGMCTCKMGVYGPKCDDCHPGFFHFSSTGCQPCQCNNHSTYCHPQSGICLDCQDNTQGHNCEEC 279

  Fly   915 LDGYYGNPLFGSEIGCRPCRCPETVASGLAHADGCSLDTRNNNMLCHCQEGYSGSRCEICADNFF 979
            |..:|.....||...|.||.|....:||:     |.||:....:...|:.|::|..|:.|.|..|
Zfish   280 LPSFYRRGGEGSADVCLPCPCSSETSSGI-----CHLDSSGRPVCAECKPGFTGPTCDSCTDGLF 339

  Fly   980 GNPDNGGTCSKCECSNNVDLYDTGN-CDRQTGACLKCLYQTTGDHCELCKDGFFGDALQQNCQQC 1043
               .:.|||..|:|:.|.|...... |..:||.|.:|:..|||.|||:|..|:.|||.:.||...
Zfish   340 ---KSAGTCIPCDCNGNADPRSVPQICHPETGHCHRCVNHTTGAHCEICARGYTGDARRHNCTLR 401

  Fly  1044 ECDFLGTNNT--------IAHCDRFTGQCPCLPNVQGVRCDQCAEN 1081
            ....|.|.:.        :......|.  |.||.:|....|....|
Zfish   402 AVKVLPTTSVSSTPSSRLLTSSSPTTN--PSLPTLQSGTGDSAGHN 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:395007
Laminin_EGF 418..475 CDD:395007
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543 15/45 (33%)
Laminin_EGF 837..885 CDD:395007 18/49 (37%)
Laminin_EGF 883..930 CDD:395007 21/46 (46%)
Laminin_EGF 933..988 CDD:395007 15/54 (28%)
Laminin_EGF 991..1035 CDD:395007 18/44 (41%)
Laminin_EGF 1043..1091 CDD:395007 9/47 (19%)
Laminin_EGF 1094..1142 CDD:395007
Laminin_EGF 1142..1190 CDD:395007
Mplasa_alph_rch 1228..>1771 CDD:275316
cc_DmLAMB1-like_C 1717..1786 CDD:411973
si:ch211-158d24.2XP_689297.6 EGF_Lam 152..>191 CDD:238012 14/38 (37%)
EGF_Lam 201..245 CDD:214543 16/44 (36%)
EGF_Lam 247..286 CDD:238012 19/38 (50%)
EGF_Lam 347..397 CDD:238012 20/49 (41%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.