DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and LAMB4

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_011514277.1 Gene:LAMB4 / 22798 HGNCID:6491 Length:1772 Species:Homo sapiens


Alignment Length:40 Identity:12/40 - (30%)
Similarity:24/40 - (60%) Gaps:4/40 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 KSRSKPSSSSSSSSGRVSKPSSSSSSSSSYSNPGSLSYSN 79
            |.::..||:|:||:|.    :::|:.|...:...:||.|:
Human   296 KRKNSTSSTSNSSAGN----NANSTGSKKKTTAANLSLSS 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 6/26 (23%)
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:395007
Laminin_EGF 418..475 CDD:395007
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:395007
Laminin_EGF 883..930 CDD:395007
Laminin_EGF 933..988 CDD:395007
Laminin_EGF 991..1035 CDD:395007
Laminin_EGF 1043..1091 CDD:395007
Laminin_EGF 1094..1142 CDD:395007
Laminin_EGF 1142..1190 CDD:395007
Mplasa_alph_rch 1228..>1771 CDD:275316
cc_DmLAMB1-like_C 1717..1786 CDD:411973
LAMB4XP_011514277.1 Laminin_N 28..263 CDD:459653
EGF_Lam 264..320 CDD:238012 9/27 (33%)
Laminin_EGF 332..382 CDD:395007 12/40 (30%)
Laminin_EGF 395..452 CDD:395007
EGF_Lam 454..503 CDD:238012
EGF_Lam 505..549 CDD:238012
EGF_Lam 768..809 CDD:238012
Laminin_EGF 822..865 CDD:395007
EGF_Lam 862..909 CDD:238012
Laminin_EGF 970..>1012 CDD:395007
Laminin_EGF 1033..1077 CDD:395007
Laminin_EGF 1080..1128 CDD:395007
EGF_Lam 1127..>1165 CDD:238012
Mplasa_alph_rch 1254..>1714 CDD:275316
Blue background indicates that the domain is not in the aligned region.

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