DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and lama1

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_004915294.2 Gene:lama1 / 100488009 XenbaseID:XB-GENE-968308 Length:3101 Species:Xenopus tropicalis


Alignment Length:2203 Identity:526/2203 - (23%)
Similarity:817/2203 - (37%) Gaps:701/2203 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CERSSCYPATGNLLIGRENRLTASSTCGLHSPERFC-ILSH-----LQDKKCFLCDTREETKHDP 107
            |.....:||..||  .....::.::|||...||.|| ::.|     :::.:|.:||   :...:|
 Frog    17 CHLRGLFPAILNL--ASNAHISTNATCGEMGPEMFCKLVEHVPGRPVRNPQCRICD---QNSINP 76

  Fly   108 YKNHRIGQIIYKTKPGTNIPTWWQS---ENGK--ENATIQLDLEAEFHFTHLII-TFTTFRPAAM 166
            .:.|.|...|    .|||  .||||   :||:  ...||.|||:..|...::|| ...:.||...
 Frog    77 KERHPISNAI----DGTN--DWWQSPSIQNGRVYHWITITLDLKQVFQVAYVIIKAANSPRPGNW 135

  Fly   167 YIERSFDFGQTWHIYRYFAYDCKESFP--------GVPTVLENITDVMCTSRYSNVEPSRNGEVI 223
            .:|||.| |..:..::|:|....|...        |.||...: .:|:|||.||.:.|..:||:.
 Frog   136 ILERSVD-GVEFMPWQYYAISDTECLTRYNVTPRIGPPTYKRD-NEVICTSYYSRLVPLEHGEIH 198

  Fly   224 FRVLPPNINVTDPYAEHVQ-NQLKMTNLRIQ---------MTKLHKLGDNLLDSRLENEEKYYYG 278
            ..::....:..||....:. ...:...||:|         ||..|:   :|.|.......:|||.
 Frog   199 TSLINGRPSADDPSPALLDFTSARYIRLRLQRIRTLNADLMTLSHR---DLRDVDPIVTRRYYYS 260

  Fly   279 ISNMVVRGSCSCYGHASQCLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKP 343
            :.::.|.|.|.|||||..| |.|         :..:..:|:|..||.|.:|.||...::..||:|
 Frog   261 VKDLSVGGMCICYGHARSC-PWD---------EVSLKFQCQCERNTCGESCNECCPGYHQNPWRP 315

  Fly   344 AFGKKTNACKKCECNDHAVSCHFDEAVFTA-------SGFVSGGVCDNCLHNTRGQHCEECMPYF 401
            ......|.|:||.|::.|..|::|:.|...       :.::.||||.||...|.|.:||.|:..:
 Frog   316 GTISVGNKCEKCNCHNKAEDCYYDQGVADRNMSLNINNQYIGGGVCLNCTQFTAGINCETCIEGY 380

  Fly   402 YRDPEQDITSERVCQPCDCDPQGSSDDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWN 466
            ||..:.....:..|.||:||..||.:.......|..:.|:..|.|.||...||.:|:|||.|:..
 Frog   381 YRQHKVSPYEDNPCIPCECDVFGSVNSVCVVDDNHAKPGSSPGQCQCKEGYTGIKCDQCKFGFKG 445

  Fly   467 LQSDNPEGCEPCTCNPLGTLNNSGCVMRTGECKCKKYVTGKDCNQCMPETYGLSE-SPEGCSLCN 530
            ..:     |..|.|:.:|::|...|   ..:|.||..|.|::|::|....|.|.| :||||:.| 
 Frog   446 YPN-----CVRCNCSLVGSVNEDPC---AEQCVCKDNVEGENCDRCKAGFYNLQERNPEGCTEC- 501

  Fly   531 CDAGGSYDNYCDVISGQC-RCRPHMT--------------GRSCSQPKQNYFI-PLLPEVHEAE- 578
                     :|..:||.| ....|.|              |....||||:.|. |....|:.:: 
 Frog   502 ---------FCFGVSGVCDGLFWHTTKVSDVVGWHISDLQGTQRIQPKQDQFDGPHQISVNNSDA 557

  Fly   579 ----------------VVDECISYGANGNCSLVAETPDGSFTGIGFTRVPENSELVFTVGDIPRS 627
                            :.::.:|||.....::..:.|:.|          .:|||:..|      
 Frog   558 RKAFQSAFFWDAPSSYLGNKLVSYGGYLRYTVSYDIPEDS----------ADSELISDV------ 606

  Fly   628 MPYDAVIR---YQSTSRGDW--------ENAFITLVRPDQVDPEGGCGELAAATSSETRIPFSLP 681
               |.:|:   :..::|||.        ..|.:.||..:.||             ..||.|.   
 Frog   607 ---DVIIKGNGHTLSTRGDGVQLQPFEEHTAELKLVPDNFVD-------------FSTRKPV--- 652

  Fly   682 DRSRQVVALNEVCLEAGKVYKFRIYFERKRHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLADI 746
            ||.|.:..|       ..:...:|   |..:::...|.|.| .|:|:       .|.|.:|:|.:
 Frog   653 DRDRLMTVL-------ANINHLKI---RANYNLAKNTVTRL-SSVTM-------DIAQPNVIAFL 699

  Fly   747 RKKDYEKYNCKSSLYDMNYKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCESNGGYCQCK 811
                                  |..| ::|                               |:|.
 Frog   700 ----------------------PAVQ-VEN-------------------------------CECP 710

  Fly   812 PNVVGRQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYCDLITGQCQCVPNTYGRECNQCQPGYWN 876
            |...|..|:.|:||.|..|            |:      |..|.||                   
 Frog   711 PGYAGTSCESCSPGFYRVG------------GT------LFGGICQ------------------- 738

  Fly   877 FPECRVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVAS 941
                 .|:|||||..|| |.|.|.|||.:|||..||.||.|||||||:|:...|:||.||.::.|
 Frog   739 -----PCECNGHATECD-IHGVCFDCQHNTTGPHCDQCLPGYYGNPLYGTPQDCQPCTCPLSIPS 797

  Fly   942 GLAHADGCSLDTRNNNMLC-HCQEGYSGSRCEICADNFFGNPD-NGGTCSKCECSNNVDLYDTGN 1004
            . ..:..|.|.: :..::| .|..|||||||:.||:.:||||. .||.|..|:|:.|||..:||:
 Frog   798 N-NFSPTCHLSS-DGEVICDQCPPGYSGSRCDKCANGYFGNPTMPGGLCVPCDCNGNVDPSETGH 860

  Fly  1005 CDRQTGACLKCLYQTTGDHCELCKDGFFGDAL-QQNCQQCECDFLGTNNTI-AHCDRFTGQCPCL 1067
            ||..||.||||:..|.|.|||:|.|||:|||: .:||..|.|.   .|::| |.|...||.|.|.
 Frog   861 CDSVTGECLKCIDNTAGSHCEICADGFYGDAVFAKNCTACRCH---PNSSISATCHHETGLCECK 922

  Fly  1068 PNVQGVRCDQCAENHWKIASGEGCESCNCDPIGAL------------------------------ 1102
            .||.|.|||.|...|:.:.:|.||..|||..:|::                              
 Frog   923 INVLGQRCDTCVHGHYGLTTGLGCHPCNCSQMGSISDACNDLGQCPCVPGVAGLKCDICAHGFYA 987

  Fly  1103 ------------HEQ--CNSYTGQCQCKPGFGGRACNQCQAHYWG-NPNEKCQPCECDQFGAADF 1152
                        |.|  ||..||:|.|.|...|..|:.|:|:||| :|...|..|.|...|:...
 Frog   988 FQEGGCSPCDCAHTQNNCNPMTGECICPPHTLGPKCDSCEANYWGHDPELGCLNCNCSIAGSQTL 1052

  Fly  1153 QCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPC-------------------------GEC 1192
            |||..:|.|.|.:|.||:.||.||.|: .::|.|..|                         |.|
 Frog  1053 QCDLSSGQCPCRDGFGGHTCNTCAFGF-RKYPSCIACDCDPSGTQSAWCDDTQTVCSCEEDAGIC 1116

  Fly  1193 FNNWDLILSALEDATTATI-LRAKEIKQVGATGAYTSEFSEL----------------DKKLQHI 1240
            ....:::.|...:..|.|. |||.  ..:|.|..:.|..|:|                |:.|.|:
 Frog  1117 ACKGNVVGSYCNECKTGTFALRAD--NPLGCTPCFCSGVSQLCTETDGYVRIPISLIPDQPLLHV 1179

  Fly  1241 RNLLQNTSVS----------LVDI----EKLDYET-------QSLRDQLQASHGRLSET------ 1278
            .:|......:          |:|.    ::|:.|.       |.|.:::.:..|.|:..      
 Frog  1180 VSLSNQDGTTDGVFSEFPEMLLDAGMVQQRLNSEAFYWQLSDQFLGNKMMSYGGWLTYVITYYAV 1244

  Fly  1279 -EQNLDDIYNSLSLSGVELESLQNHSRLVQQLSKELKENGIQLQESNIEGALNLTRHAYERVSNL 1342
             :..:.|....:.:.|.....|..::.:....::...|..|.|.|:|.:        .:..||:.
 Frog  1245 GDSGISDFEPHILMKGGRFSKLVIYADIPPPANRLRSEIQISLTENNWK--------YFNAVSDR 1301

  Fly  1343 STLKDEANELASNTD-----------RNCKRVENLSNKIQAEADDLANNNK---LIEDYRAEL-- 1391
            |..:.:...:..|.|           .:..|:.|:|..|..||.::.:..:   |||.....|  
 Frog  1302 SVSRSDFMSVLENVDYILIKASYGYGLHQSRIANISMDIAVEASEMHSGREVAHLIEICECPLGY 1366

  Fly  1392 TSLTSQ----------------------------------------------------------- 1397
            |.|:.|                                                           
 Frog  1367 TGLSCQDCAPGYYKEKPMETSVRGSQSLIARCVPCQCNNHSEICDPDTGKCQDCRDNTDGHHCHV 1431

  Fly  1398 ----------------------------------------------IPELNNQVC--------GK 1408
                                                          :|....|.|        |.
 Frog  1432 CASGFYGRVTGTIADCSLCACPKGNTQSFSPTCVLEGISDFRCDACLPGYEGQYCERCSLGYYGN 1496

  Fly  1409 PGDP------------------CDSLCGGAGC--GHCGGF---------------LSCEH---GA 1435
            |.:|                  ||.:.|...|  |..|..               :||:.   |.
 Frog  1497 PNEPGGTCQKCDCNFSGSLNNDCDGMTGQCSCKPGVTGRLCDTCEIRHILLDQECISCDDDCTGP 1561

  Fly  1436 KTHSEEALKVAKDAET---------AITSKKDQADQTIRALTQAKLNASEAYEKAKRGFEQSE-- 1489
            .....::|.:|..:..         .|.|:.:...|.::.....:.|.:...:..|:..:.||  
 Frog  1562 LLDDLDSLHMAMHSVNLTGIIPVPYGILSQLENVTQDLQDSVSRRANTTLIEKATKQLSKMSETT 1626

  Fly  1490 ----------------------RYLNQT----------NANIKLAENLFIALNNFQENKTASPSE 1522
                                  |.||:|          :..||:...:..:||:...|.|     
 Frog  1627 DELQLRMAQMTSHGEAVNNSTIRTLNKTQELVAFIEKMHETIKVLVEVAESLNDTMANDT----- 1686

  Fly  1523 SKELAQKTL-----DLDLKLEPEEIETLGDQINRAVSSLKNVEAIIYRTKPDLDRVN-NLQSIAN 1581
              :|:..||     |:...|.....::..||...|...||..|.::.:.:.|..:.: :|:.|.|
 Frog  1687 --QLSNSTLLNYQDDVSSMLGHMTSKSFKDQQLIATEHLKASEGLLSKVQKDFGKPHQDLRKIKN 1749

  Fly  1582 ---ATKEKADKILDSANSVVESLAAADESQGKAKDAIQQANSNIELAGQDLEK------------ 1631
               ||.||..:.|.||..::...:....|......::|:..::..:...:||:            
 Frog  1750 SLQATLEKHTRNLQSARDILLEASTNTNSTNHLLVSVQKNLADYNVKSLNLEENKNRSMLLVEEG 1814

  Fly  1632 ---IDEETYSAEAPANNT----AQQVE------KLAKKVQKLQNNIMKND------------RDA 1671
               :|:....||...|.|    |.|.|      ||...|..|...:.|.|            .|.
 Frog  1815 LCLVDDAVLLAEDTINATSVLEAHQEELILWNTKLRHHVDHLVMQMAKRDALELVYKAEDHAADL 1879

  Fly  1672 KEITKEAGSVKLE----------AMRARGEANNLQSATSA----TNQTLTDR------ASRSENA 1716
            .:|::...|..|:          |:..:.|.:|:.....|    :|.|:|:.      .|..|.:
 Frog  1880 MKISESMNSSLLDIRDTTLNATVAVLTKSEISNMVEQAWALADQSNHTITEAQESVSLQSTCERS 1944

  Fly  1717 RERAKQLLQRASKLTVDTNAKLKDLNDLQTVYLNKNQQLLRLQAEIGPLNKELNEHLI 1774
            ...::|||..|..|:.:|...:.|||.|:|       ::.::|........::|:||:
 Frog  1945 MMFSRQLLNEAKNLSRNTEGLMTDLNKLKT-------KVAKIQNRTRMFTLQINKHLL 1995

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 72/261 (28%)
EGF_Lam 287..343 CDD:238012 19/55 (35%)
Laminin_EGF 355..415 CDD:395007 19/66 (29%)
Laminin_EGF 418..475 CDD:395007 18/56 (32%)
EGF_Lam 477..526 CDD:238012 17/49 (35%)
EGF_Lam 529..567 CDD:214543 12/52 (23%)
EGF_Lam 789..834 CDD:214543 10/44 (23%)
Laminin_EGF 837..885 CDD:395007 6/47 (13%)
Laminin_EGF 883..930 CDD:395007 29/46 (63%)
Laminin_EGF 933..988 CDD:395007 23/56 (41%)
Laminin_EGF 991..1035 CDD:395007 25/43 (58%)
Laminin_EGF 1043..1091 CDD:395007 19/48 (40%)
Laminin_EGF 1094..1142 CDD:395007 22/92 (24%)
Laminin_EGF 1142..1190 CDD:395007 20/72 (28%)
Mplasa_alph_rch 1228..>1771 CDD:275316 140/862 (16%)
cc_DmLAMB1-like_C 1717..1786 CDD:411973 15/58 (26%)
lama1XP_004915294.2 LamNT 16..268 CDD:214532 73/266 (27%)
EGF_Lam 270..317 CDD:238012 20/56 (36%)
Laminin_EGF 397..454 CDD:395007 20/61 (33%)
Laminin_EGF 452..498 CDD:395007 17/48 (35%)
Laminin_B 566..705 CDD:459652 39/214 (18%)
EGF_Lam 739..787 CDD:238012 29/48 (60%)
Laminin_EGF 789..844 CDD:395007 23/56 (41%)
Laminin_EGF 847..891 CDD:395007 25/43 (58%)
EGF_Lam 899..947 CDD:238012 20/50 (40%)
EGF_Lam 949..993 CDD:214543 4/43 (9%)
EGF_Lam 995..1039 CDD:238012 17/43 (40%)
Laminin_EGF 1042..1090 CDD:395007 20/48 (42%)
Laminin_EGF 1088..1145 CDD:395007 9/58 (16%)
Laminin_B 1216..1358 CDD:459652 24/149 (16%)
Laminin_EGF 1401..1447 CDD:395007 0/45 (0%)
Laminin_EGF 1450..1504 CDD:395007 6/53 (11%)
Laminin_EGF 1507..>1541 CDD:395007 6/33 (18%)
Laminin_I 1575..1826 CDD:310534 44/257 (17%)
Mplasa_alph_rch <1906..>2108 CDD:275316 23/97 (24%)
Laminin_II 2035..2145 CDD:368703
LamG 2141..2281 CDD:214598
LamG 2308..2465 CDD:238058
LamG 2490..2655 CDD:238058
Laminin_G_1 2770..2898 CDD:395008
LamG 2918..3071 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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