DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB1 and lamb2

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_004914156.1 Gene:lamb2 / 100485566 XenbaseID:XB-GENE-5935962 Length:1793 Species:Xenopus tropicalis


Alignment Length:1836 Identity:758/1836 - (41%)
Similarity:1077/1836 - (58%) Gaps:111/1836 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VIVLALLSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGRENRLTASS 73
            :::.||::.....:..|   |||                 |.:.|||||||:||:||.::|.|:|
 Frog    10 IVITALVTGSLSQIPDQ---QHG-----------------CSQGSCYPATGDLLVGRADKLKATS 54

  Fly    74 TCGLHSPERFCILSHLQD-KKCFLCDTREETKHDPYK------NHRIGQIIYKTKPGTNIPTWWQ 131
            ||||...:.:||:||||| ||||:||:|:     ||.      :|||..:|....|... ..|||
 Frog    55 TCGLRRAQPYCIVSHLQDEKKCFVCDSRK-----PYNPLYNPISHRIENVITTFAPHRK-KAWWQ 113

  Fly   132 SENGKENATIQLDLEAEFHFTHLIITFTTFRPAAMYIERSFDFGQTWHIYRYFAYDCKESFPGVP 196
            ||||....||||||||||||||||:||.|||||||.:|||.|||:||..||||.:||..|||.|.
 Frog   114 SENGVSAVTIQLDLEAEFHFTHLIMTFKTFRPAAMLVERSADFGRTWQAYRYFGHDCASSFPNVS 178

  Fly   197 -TVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNINVTDPYAEHVQNQLKMTNLRIQMTKLHKL 260
             :.|..:.:|:|.||||::|||..||||:|||.|.|.:.|||..::||.||:|||||..||||.|
 Frog   179 RSALRKVDEVICESRYSDIEPSTEGEVIYRVLDPAIPIRDPYGPNIQNLLKITNLRINFTKLHTL 243

  Fly   261 GDNLLDSRLENEEKYYYGISNMVVRGSCSCYGHASQCLPLDPAFSQADNEDGMVHGRCECTHNTK 325
            ||||||||:|.:|||||.:..:||||:|.||||||:|.|:.   ..:.:.:|||||||.|.||||
 Frog   244 GDNLLDSRVEIKEKYYYALYELVVRGNCFCYGHASECAPIQ---GVSRDVEGMVHGRCVCKHNTK 305

  Fly   326 GMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTR 390
            |:|||:|:..||||||:||.|:.|||||||.||:|:..||||.||:.::|.|||||||:|:|||.
 Frog   306 GLNCEQCDSSFNDLPWRPAEGRSTNACKKCNCNNHSRKCHFDMAVYLSTGNVSGGVCDDCVHNTM 370

  Fly   391 GQHCEECMPYFYRDPEQDITSERVCQPCDCDPQGSSDDGICDSLNELEEGAVAGACHCKAFVTGR 455
            |::||.|.|:||:||.:|:....||:.|||||.||.|.|:||||:....|.:||.|.||.:|.|.
 Frog   371 GRNCELCKPFFYKDPSKDLRDSAVCKACDCDPDGSLDGGLCDSLDNPALGLIAGQCRCKDYVEGP 435

  Fly   456 RCNQCKDGYWNLQSDNPEGCEPCTCNPLGTLNNSG-CVMRTGECKCKKYVTGKDCNQCMPETYGL 519
            ||::||.|::.|.::|.:||:.|.|:|.||:::.. |...:|:|.||::|||:.||||:||.:.|
 Frog   436 RCDRCKTGFFGLSTNNFQGCQRCQCDPRGTISDGAQCDPISGDCFCKRFVTGRTCNQCLPEFWAL 500

  Fly   520 SESPEGCSLCNCDAGGSYDNYCDVISGQCRCRPHMTGRSCSQPKQNYFIPLLPEVHEAEVVDECI 584
            |....||..|:||.||::||:|...:||||||.||.||.|:|.|..|:     .:|......|..
 Frog   501 SHDLHGCRSCDCDIGGAWDNHCATETGQCRCRSHMVGRQCNQVKSGYY-----RIHLDHYTYEAE 560

  Fly   585 SYGANGNCSLVAET----PDGSFTGIGFTRVPENSELVFTVGDIPRSMPYDAVIRYQSTSRGDWE 645
            |......||::...    ...::||.||..|||...|.|.:.:||.||.||.:|||:......||
 Frog   561 SALHRQGCSVLERERLIGRPATWTGPGFALVPEGGILEFQISNIPYSMEYDVIIRYEPQLPATWE 625

  Fly   646 NAFITLVRPDQVDPEGGCGELAAATSSETRIPFSLPDRSRQVVALNEVCLEAGKVYKFRIYFERK 710
            ...|:::||..:.....||....|   :..:..|||..:|.||....||||.|..|..|:.|.|.
 Frog   626 QVKISVIRPGPIPTSSPCGNTIPA---DDLMVASLPPGTRHVVLPQPVCLERGVSYTIRLEFSRY 687

  Fly   711 RHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLADI-RKKDYEKYNCKSSLYDMNYKSDPK-CQN 773
            ......|:|.||:|||.|:||.....:|.....|.| ||:.:|:|.|.|:..::...|..: |..
 Frog   688 SLREKIPSANILIDSLVLVPRYSSMEMFIAGDPASIQRKETFERYRCHSNSGNVIKSSTTEVCSG 752

  Fly   774 LDNILSVFVHDGASMCNCNPTGSLSKVCESNGGYCQCKPNVVGRQCDQCAPGTYGFGPEGCKACD 838
            |...:|..:|:||..|:|:|.||||..|:.|||.||||.||:|::||:|||||:||||.|||||:
 Frog   753 LITSMSAIIHEGALPCSCDPQGSLSSECDPNGGQCQCKANVIGQRCDRCAPGTHGFGPTGCKACE 817

  Fly   839 CNSIGSKDKYCDLITGQCQCVPNTYGRECNQCQPGYWNFPECRVCQCNGHAATCDPIQGTCIDCQ 903
            ||..||...:||..||||.|.|..:|..|::||||:|.||.||.||||||:..||...|.|::|:
 Frog   818 CNMEGSTHNFCDQRTGQCPCRPGAFGSRCDRCQPGHWGFPNCRQCQCNGHSEECDQRTGACLNCR 882

  Fly   904 DSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVASGLAHADGCSLDTRNNNMLCHCQEGYSG 968
            |.:||..|:.|..|:||||:.||...||||.|||...||..:|..|..|.|:..::|:|::||:|
 Frog   883 DHSTGDRCERCTAGFYGNPILGSGDHCRPCPCPEGPNSGRHYAASCHQDPRSRQVICNCKQGYTG 947

  Fly   969 ----------SRCEICADNFFGNP-DNGGTCSKCECSNNVDLYDTGNCDRQTGACLKCLYQTTGD 1022
                      .|||.|:..||||| ..||.|..|:|:||:|:.|.|.|||::|.||||.|.|.|.
 Frog   948 LVKRAMGLRRPRCEECSPGFFGNPFQTGGRCLLCQCNNNIDMTDIGGCDRRSGQCLKCKYNTEGR 1012

  Fly  1023 HCELCKDGFFGDALQQNCQQCECDFLGT------NNTIAHCDRFTGQCPCLPNVQGVRCDQCAEN 1081
            .||.|:.||:|||.::||::|.|::|||      :.....|||.:|||.|||||:|..||:|:.:
 Frog  1013 FCEHCRIGFYGDASRRNCRKCTCNYLGTEPSQCPSREDCMCDRTSGQCLCLPNVRGQNCDRCSPH 1077

  Fly  1082 HWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACNQCQAHYWGNPNEKCQPCECDQ 1146
            .|.:|||:||:.|||||..:....||.:||:|||:|||||..|..||.:||||||.:|:.|:||:
 Frog  1078 FWNLASGKGCQPCNCDPNHSFSLSCNEFTGKCQCRPGFGGLTCTDCQENYWGNPNIQCRACDCDR 1142

  Fly  1147 FGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPCGECFNNWDLILSALEDATTATI 1211
            .|....||:|.:|:|.|..|:.|.:|::||||:.||||.|.||.:||.:||.|:..|...|.:.:
 Frog  1143 RGIKAPQCNRASGHCDCRAGVSGVRCDQCARGFSGQFPDCQPCHQCFGDWDRIVQDLATRTKSLV 1207

  Fly  1212 LRAKEIKQVGATGAYTSEFSELDKKLQHIRNLLQNTSVSLVDIEKLDYETQSLRDQLQASHGRLS 1276
            .|.|:|:|.|..|.|...|.|::|||...:.::...:.:...:.||......||:::..|...|:
 Frog  1208 QRGKDIQQSGVAGVYQKNFREIEKKLAKAQGIVNARNATAESVTKLMKIMDDLRNKINESTEALT 1272

  Fly  1277 ETEQNLDDIYNSLSLSGVELESLQNHSRLVQQLSKELKENGIQLQESNIEGALNLTRHAYERVSN 1341
            :.|..|..:.:....:..:|..|:..:|.:...:||.......|:.||..|       ||:.:..
 Frog  1273 QLEGELTAVQDENFDANHDLAELERDARSLNMTAKERSHQLDVLKNSNFLG-------AYDSIQQ 1330

  Fly  1342 LSTLKDEANELASNTDRN--------CKRVENLSNKIQAEADDL----ANNNKLIEDYRAELTSL 1394
            ......:|.:.|:|...|        .:..|.....|..:.||.    |.|.:.:.|..|:..:|
 Frog  1331 SHAKSRQAEKQANNATTNVPSPVSDSARTREKTQQLITHKRDDFNRKNAANRRALNDLAAKTDTL 1395

  Fly  1395 TSQIPELNNQVCGKPGD-PC-DSLCGGAGC------GHCGGFLSCEHGAKTHSEEALKVAKDAET 1451
              .:.::|.:|||.||| || :|.||||||      .|||| |:| :||...::.||..|:.||.
 Frog  1396 --DMKKINEKVCGAPGDAPCSESPCGGAGCRDDEGKRHCGG-LNC-NGAVATADNALGRARHAEE 1456

  Fly  1452 AITSKKDQADQTIRALTQAKLNASEAYEKAKRGFEQSERYLNQTNANI----KLAENLFIALNNF 1512
            .:.....:.:...:.:.:||:.|..|.::|:...:::    |:|.|.:    |....|...:.:|
 Frog  1457 ELQKALGEVEVLFQKVAEAKVKADRAKQRAQATLDRA----NETKARVEQSNKELRELIQQIKDF 1517

  Fly  1513 QENKTASPSESKELAQKTLDLDLKLEPEEIETLGDQINRAVSSLKNVEAIIYRTKPDLDRVNNLQ 1577
            ...:.|.|...:.:|.:.|||.:...|::|:.|.::|...|.:|.||:||:.:|..|:.:...|.
 Frog  1518 LNQEGADPDSIEMVASRVLDLTIPATPKQIQRLAEEIKDRVKTLANVDAILDQTAADVRKAEQLL 1582

  Fly  1578 SIANATKEKADKILDSANSVVESLAAADESQGKAKDAIQQANSNIELAGQDLEKIDEETYSAEAP 1642
            ..|...|.:|:.:.::|.||..:|..|..:|..|:.|||.||.:|:...:.|..|...|.|||..
 Frog  1583 HEAKRAKNRAENVKNTAESVKRALDDARRAQNAAEGAIQSANDDIKDTERKLTAIQTATSSAENQ 1647

  Fly  1643 ANNTAQQVEKLAKKVQKLQNNIMKNDRDAKEITKEAGSVKLEAMRARGEANNLQSATSATNQTLT 1707
            .|:...:|..|.|::..|:.....|...|....:.|.:...:|..|:.......:....|.|.:.
 Frog  1648 LNDAMDRVGNLDKQIDGLKMKRANNSLAASRAEESATAALDKANDAKKILEGQLADKYKTVQNVV 1712

  Fly  1708 DRASRS-ENARERAKQLLQRASKLTVDTNAKLKDLNDLQTVYLNKNQQLLRLQAE-IGPLNKELN 1770
            ||.::: :.|:.:|.||...|.||..:...|||.|.||:..| .||::||:.:|: :..|..::.
 Frog  1713 DRKAKNIKEAKTKADQLQDEAKKLLENAQDKLKRLQDLEVEY-TKNEKLLQDKAKRLNGLEDKMK 1776

  Fly  1771 EHLIHIKERGSHYRQC 1786
            |.|..|.::...|..|
 Frog  1777 EILHAINQQIQIYNTC 1792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 140/239 (59%)
EGF_Lam 287..343 CDD:238012 32/55 (58%)
Laminin_EGF 355..415 CDD:395007 32/59 (54%)
Laminin_EGF 418..475 CDD:395007 28/56 (50%)
EGF_Lam 477..526 CDD:238012 21/49 (43%)
EGF_Lam 529..567 CDD:214543 21/37 (57%)
EGF_Lam 789..834 CDD:214543 29/44 (66%)
Laminin_EGF 837..885 CDD:395007 25/47 (53%)
Laminin_EGF 883..930 CDD:395007 23/46 (50%)
Laminin_EGF 933..988 CDD:395007 26/65 (40%)
Laminin_EGF 991..1035 CDD:395007 24/43 (56%)
Laminin_EGF 1043..1091 CDD:395007 24/53 (45%)
Laminin_EGF 1094..1142 CDD:395007 27/47 (57%)
Laminin_EGF 1142..1190 CDD:395007 23/47 (49%)
Mplasa_alph_rch 1228..>1771 CDD:275316 152/568 (27%)
cc_DmLAMB1-like_C 1717..1786 CDD:411973 23/69 (33%)
lamb2XP_004914156.1 Laminin_N 35..269 CDD:459653 140/239 (59%)
EGF_Lam 271..323 CDD:238012 32/54 (59%)
Laminin_EGF 335..386 CDD:395007 30/50 (60%)
Laminin_EGF 398..455 CDD:395007 28/56 (50%)
EGF_Lam 457..508 CDD:238012 22/50 (44%)
EGF_Lam 509..549 CDD:238012 22/44 (50%)
EGF_Lam 768..813 CDD:214543 29/44 (66%)
Laminin_EGF 816..864 CDD:395007 25/47 (53%)
Laminin_EGF 862..909 CDD:395007 23/46 (50%)
EGF_Lam 911..976 CDD:238012 25/64 (39%)
EGF_Lam 981..1029 CDD:238012 26/47 (55%)
Laminin_EGF 1033..1088 CDD:395007 25/54 (46%)
Laminin_EGF 1090..1138 CDD:395007 27/47 (57%)
EGF_Lam 1138..1182 CDD:214543 21/43 (49%)
PTZ00121 <1228..1776 CDD:173412 151/563 (27%)
cc_LAMB2_C 1722..1793 CDD:411970 25/72 (35%)

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