DRSC/TRiP Functional Genomics Resources

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Protein Alignment: r2d2 and STAU1

Sequence 1:NP_001162903.1 Gene:r2d2 FlyBaseID:FBgn0031951 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_001309861.1 Gene:STAU1 HGNCID:11370 Length:583 Species:Homo sapiens

Alignment Length:183 Identity:46/184 (25%)
Similarity:84/184 (46%) Gaps:22/184 (12%)


  Fly    47 GNGRSKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLDEELTNLNRDMVKELRDYCVRREMPL 111
            |.|::::.|||.||:..||.:|..|    |.:...|...:.|..|||:..:.::.:..::|.:|:
Human   140 GKGKTRQAAKHDAAAKALRILQNEP----LPERLEVNGRESEEENLNKSEISQVFEIALKRNLPV 200

  Fly   112 -----PCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISSNSDNLRPD 171
                 |..:|.::||.|....||...||...|..|:...||.:::.|||.:|..:.........:
Human   201 NFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVE 265

  Fly   172 QMQVASTSKLK-VVDMEESME------------ELEALRRKKFTTYWELKEAG 211
            :::.....|.| :|..:.|.|            :::..:::|...|..|.|.|
Human   266 RVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERG 318

Known Domains:


GeneSequenceDomainRegion External IDIdentity
r2d2NP_001162903.1 DSRM 6..67 CDD:238007 9/20 (45%)
DSRM 95..158 CDD:238007 18/68 (26%)
STAU1NP_001309861.1 DSRM 186..256 CDD:214634 19/70 (27%)
DSRM 292..358 CDD:238007 5/28 (18%)
Staufen_C 454..563 CDD:293091
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3732
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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