Protein Alignment Herp and herpud1

DIOPT Version :10

• Sequence 1: NP_609151.2
• Gene: Herp / 34065
• FlyBaseID: FBgn0031950
• Length: 465
• Species: Drosophila melanogaster
• Sequence 2: XP_005159177.1
• Gene: herpud1 / 565499
• ZFINID: ZDB-GENE-050913-47
• Length: 408
• Species: Danio rerio
• Alignment Length: 499
• Identity: 137/499 - (27%)
• Similarity: 204/499 - (40%)
• Gaps: 169/499 - (33%)

  Fly    28 SVRLLIKSSNQQYEDL---NVDSDLCWTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKIS 89
            ::.|:||:.||.:.|.   .|.:|  |||:.||.|||.:||..|..:||:||||||||.|:..|
Zfish    11 TISLVIKTPNQFHGDQLIEGVRAD--WTVKDLKCHLSKVYPNNPAEKDQRLIYSGKLLLDNLLI- 72

  Fly    90 EVIRSYKDVYQQ-----HHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAP 149
                  :||:.:     ....|||||.:.  :||::         :.|.|:||          :.
Zfish    73 ------RDVFSKVPSDTKPTLHLVCAVRP--QPASQ---------LGARPKVT----------ST 110

  Fly   150 HQQQAQQG------NAGPHVT---GDIGLANPWTHFWQQSQGAAP--AANASA-----------S 192
            |||.:|..      ::||.||   ...||.       |:.....|  :||.||           .
Zfish   111 HQQSSQPSPLTPSQSSGPSVTSLHSTDGLR-------QRGHATLPDTSANTSAPVTAAMNHPAFP 168

  Fly   193 PHALFQQQALIYNAWMQQAYAQ--YMQ-QLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGE 254
            .::|:..|.|:   |:||.||:  ||| |..:.:.      :..|..|.....|:|:      |.
Zfish   169 TYSLYSPQQLL---WLQQMYARQYYMQYQAAMAAA------ASAPMTTPAAASSLPV------GP 218

  Fly   255 VQQVAGAAAAPAAQVPADPQINGAPQNRNFPN----------------------IQEEPEMH-DW 296
            .|     ||.||| :|....||..|.|:|.|.                      :::|.:|: ||
Zfish   219 HQ-----AAVPAA-LPNQGPINDLPANQNAPGPAFINPEGANQNLRMNAQGGPVVEDEEDMNRDW 277

  Fly   297 LDSFFSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIG--VLRRRRERNNNN-----INRN 354
            ||..::.:||.:|::::||.||..|.:||:.....:||:..|  ..|:|.:....|     :|:|
Zfish   278 LDWMYTASRLGVFLSIVYFYSSMSRFILVMSSLVIMYLHTAGWFPFRQRPQARPQNEPAPEVNQN 342

  Fly   355 NNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAIDAPPAGAPVAPA 419
            ...                    |.|:..|:        |.|.||...:...:|         ||
Zfish   343 QQN--------------------QNEDQHPE--------PVAPPAEVEDVGVVD---------PA 370

  Fly   420 SAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTSLLPEAP 463
            ..|.|.|      .|..|     ::.....|...||.||:||.|
Zfish   371 MTAVPVP------QVRAP-----ILWTAWVFFKAFFASLIPEPP 403

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Herp	NP_609151.2	Ubl_HERP	29..108	CDD:340488	34/86 (40%)
herpud1	XP_005159177.1	Ubl_HERP	12..90	CDD:340488	34/86 (40%)
		rad23	31..>160	CDD:273167	54/165 (33%)