DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herp and Herpud2

DIOPT Version :10

Sequence 1:NP_609151.2 Gene:Herp / 34065 FlyBaseID:FBgn0031950 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001020159.2 Gene:Herpud2 / 300463 RGDID:1307343 Length:402 Species:Rattus norvegicus


Alignment Length:486 Identity:136/486 - (27%)
Similarity:204/486 - (41%) Gaps:135/486 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 QKNPETSVRLLIKSSNQQYEDLNVDSDLCWTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQ 86
            |...|..|.|:||:.||:|.|..:...|.|||.:||.|||.:||.|||.:||:|:|||:||.|..
  Rat     3 QSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHL 67

  Fly    87 KISEVIRSYKDVYQQHHIFHLVCASKQVIRPAAKAPTVPQ---------------------KDAV 130
            ::.:::|.    ..::|:.||||||:       ..|:.|:                     .|:.
  Rat    68 QLKDILRK----QDEYHMVHLVCASR-------SPPSSPKSSTDGESHGALASSTNSNSDHSDST 121

  Fly   131 PAGPE------VTGNANELRQRHAPHQQQAQQGNAGPH-----VTGDIGLANPWTHFWQQSQGAA 184
            ...|.      |.|::..||.|..|   |||...|..|     :.|::....|       .||..
  Rat   122 TPSPSQESLSLVAGSSEGLRHRTLP---QAQTDPAQSHQFPYVIQGNVDHQFP-------GQGVP 176

  Fly   185 PAANASASPHALFQQQALIYNAWMQQAYAQ--YMQ-QLTLRSTLPGSNQSGLPPPTQPLLPSVPL 246
            |.       ..::...:.:...|.||.|||  ||| |..:.:....|..|.....:.||      
  Rat   177 PG-------FPMYPAFSPLQMLWWQQMYAQQYYMQYQAAVTAQATSSASSAQHAASSPL------ 228

  Fly   247 IAGRNFGEVQQVAGAAAAPAAQVPADPQINGAPQN-----RNFPNIQEEPEMHDWLDSFFSFTRL 306
                   .:..|.|....||..:.|  |.|| |:|     :..|.:.||....||||..::|:|.
  Rat   229 -------NLAHVPGEEPPPAPNLVA--QENG-PENVQMNAQGGPVLNEEDFNRDWLDWVYTFSRA 283

  Fly   307 AIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNN----NNINRNNNAGDAAAFAAVQ 367
            |:.::::||.||..|.::|:.....:||:..|....|:|...    ||::.||. |..|....::
  Rat   284 AVLLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQAPNNVDANNE-GQNANNLELE 347

  Fly   368 QIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAIDAPPAGAPVAPASAANPEPTDVSAE 432
            :::|:||..::.|:.:.                |||    ||..|..|...|||           
  Rat   348 EMERLMDDGLEDESGED----------------AGE----DASAAQRPGLMASA----------- 381

  Fly   433 AVEPPNANNSVISVVRTFVITFFTSLLPEAP 463
                           .:|:.||||||:||.|
  Rat   382 ---------------WSFITTFFTSLIPEGP 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HerpNP_609151.2 Ubl_HERP 29..108 CDD:340488 34/78 (44%)
Herpud2NP_001020159.2 Ubl_HERP2 9..85 CDD:340639 34/79 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..137 8/56 (14%)

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