DRSC/TRiP Functional Genomics Resources

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Protein Alignment santa-maria and scarb1

DIOPT Version :10

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:XP_002935333.1 Gene:scarb1 / 100490714 XenbaseID:XB-GENE-494666 Length:505 Species:Xenopus tropicalis


Alignment Length:560 Identity:154/560 - (27%)
Similarity:268/560 - (47%) Gaps:91/560 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MWGQKSNRKLIIGIFGFCLGLFGILCGMFWVDLFDWIMHKEMALAPDTR-VYENWKSPPIDLSLD 71
            |.|..:.:.::.|:.|..|...|.|.......:.|..:.|.:.:.|.:. .||.|:..|:...:.
 Frog     1 MAGVGNKKSIVFGVLGVLLVGVGTLLVFLVPVIMDEQVEKNVRIDPSSGFAYEMWRDLPVPFYMS 65

  Fly    72 IYLYNWTNPEDFGNLSTKPILEQVGPYRFIERPDKVDIHWHPENASVTYRRRSLFYFDAAGSNGS 136
            ||::...|.::. .|..||.|::.|||.:.|...|.:|.:: ||.:|::.....|:||...|||.
 Frog    66 IYIFEVVNHKEV-LLGEKPQLQERGPYVYREYKKKQNITFN-ENGTVSFVEFRTFHFDPEKSNGK 128

  Fly   137 LDDEITTLNAVALSAAATAKYWPPVKRSLVDVGLKM----------YGAEMSVQKSIDELLFTGY 191
            .:|.:...|.:.|.::.          .|.|:|:.:          :..|..:.|::.::|: ||
 Frog   129 EEDHVIVPNILVLGSSV----------MLQDLGIAIKWIISGAFSAFNEEAFINKTVKDILW-GY 182

  Fly   192 NDAMID-VAMAMPIFGDEVKVPF-DKFGWFYTRNGSADLTGVFNVFTGADQLAKLGQMHSWNYQE 254
            .|..:| :...:|     .|:|| .|||:|...|.|.  ||||.|.||.:.::::..:.:||..:
 Frog   183 EDPFLDFLNTFLP-----GKLPFKGKFGFFSDFNNSN--TGVFTVNTGMEDISRVQMVDNWNGLK 240

  Fly   255 NTGFFDS-YCGMTNGSAGEFQPQHLKPGDSVGLFTPDMCRTIPLDYVETVDIEGLEGYKFSGGPR 318
            ...|::| ...|.||:||:..|...||.:.:..::||.||::.|.|.:.....|:..::::....
 Frog   241 KVDFWNSEQTNMINGTAGQMWPPFRKPSEPLEFYSPDACRSMKLVYEKEEKFRGIPTFRYTAPNY 305

  Fly   319 SVDNGTQYPENLCFCGGQCVPSGVMNISSCRFGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHE 383
            ...||:.||.|..||  .||.|||.|:|:|||.:|:|:|:|||:||||.:.:.||||.|.::.|.
 Frog   306 LFANGSDYPPNEGFC--PCVASGVQNVSACRFNAPLFLSFPHFYNADPGFLESVEGLHPTEELHS 368

  Fly   384 FYMVVQPSTGIPLEVAARFQVNMLVEPIQGISLYTG-IPRIFFPLVWFEQKVRITPDMADQLKVL 447
            .::.:.|.||||:..:.:.|:|||.:.:.|| :.|| |..:..|::||.:               
 Frog   369 LFLDMHPLTGIPMNCSIKMQLNMLTKSVSGI-MQTGQIKPVILPVLWFAE--------------- 417

  Fly   448 PIVMLSGHI-------FAGICLIVGITL-----------LCWTPVQILLASCRNRRYDLRTKTKT 494
                 |||:       :..|.:::.|.|           ||:..|.::|...:..:..|      
 Frog   418 -----SGHLDGPVYNTYYNILILMPIVLEYLQYVLIGIGLCFITVALVLPFVKQGKCFL------ 471

  Fly   495 NGQYKSRSQFSSAEELKSKASTLVCEKSVKGSPDSSPLLE 534
              .:.|......::|.|::...|.       :|:...|||
 Frog   472 --FWNSNKNVDESQEFKTQKEKLT-------APNGIVLLE 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 21..476 CDD:460076 141/487 (29%)
scarb1XP_002935333.1 CD36 31..461 CDD:460076 137/472 (29%)

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