DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nuf2 and Lama3

DIOPT Version :10

Sequence 1:NP_609096.2 Gene:Nuf2 / 33992 FlyBaseID:FBgn0031886 Length:395 Species:Drosophila melanogaster
Sequence 2:XP_006525748.1 Gene:Lama3 / 16774 MGIID:99909 Length:3331 Species:Mus musculus


Alignment Length:290 Identity:64/290 - (22%)
Similarity:119/290 - (41%) Gaps:64/290 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 QLEQCSQKTKDCEVAINKLKKD------LQDTQAKLLPLKKSCSEHENTLELIEQQQGELDKRIG 208
            ||..|...|.||   :|:..||      ..|..:.::.|....:.....|.|::.:...|....|
Mouse  1791 QLGPCDPLTGDC---VNQEPKDGSPAEECDDCDSCVMTLLNDLASMGEELRLVKSKLQGLSVSTG 1852

  Fly   209 HWEQLVVEDSQVTELREKI----KSASSH---VESCKTELA----------SKKQVTNEHRRMIE 256
            ..||:...::|..:||.::    .:.|||   ::..:.||:          .|.||.:...:.:.
Mouse  1853 ALEQIRHMETQAKDLRNQLLGFRSATSSHGSKMDDLEKELSHLNREFETLQEKAQVNSRKAQTLY 1917

  Fly   257 NS--QHIATALEKATAVLSLCK--------------------VDDYKESFKQLEAVEKQLPTCKV 299
            |:  |.|.:|.|....:.::.:                    |.|:.....:.:.:.:.|.:  .
Mouse  1918 NNIDQTIQSAKELDMKIKNIVQNVHILLKQMARPGGEGTDLPVGDWSRELAEAQRMMRDLRS--R 1980

  Fly   300 NYQKLLQDAEAKKQELALCAHRYEERNQENDAENHKVQNE--LKKLQVDVEDRKKRLEDLNNHLI 362
            :::|.||:|||:|.|..|..||.     ....|:|:|:|.  ||.::..:.|.:.:|:||.:.|.
Mouse  1981 DFKKHLQEAEAEKMEAQLLLHRI-----RTWLESHQVENNGLLKNIRDSLNDYEDKLQDLRSILQ 2040

  Fly   363 ELDQQ-------NLEQDQLYAILNEQIHEV 385
            |...|       |.|.:.:...:..|:.|:
Mouse  2041 EAAAQAKQATGINHENEGVLGAIQRQMKEM 2070

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nuf2NP_609096.2 SMC_prok_B <131..381 CDD:274008 62/284 (22%)
Lama3XP_006525748.1 LamNT 40..294 CDD:214532
EGF_Lam 295..343 CDD:238012
EGF_Lam 352..420 CDD:238012
EGF_Lam 422..462 CDD:238012
Laminin_EGF 488..535 CDD:395007
EGF_Lam 532..574 CDD:238012
Laminin_EGF 628..678 CDD:395007
EGF_Lam 681..724 CDD:238012
Laminin_EGF 1263..1311 CDD:395007
EGF_Lam 1308..1349 CDD:238012
EGF_Lam 1353..1398 CDD:238012
EGF_Lam 1401..1451 CDD:238012
LamB 1509..1638 CDD:214597
EGF_Lam 1683..1729 CDD:238012
EGF_Lam 1731..1782 CDD:238012
Laminin_I 1844..2101 CDD:310534 51/234 (22%)
Smc <1962..>2283 CDD:440809 30/116 (26%)
Laminin_II 2285..2413 CDD:368703
LamG 2432..2567 CDD:214598
LamG 2599..2739 CDD:238058
LamG 2766..2898 CDD:238058
LamG 2990..3132 CDD:238058
LamG 3156..3307 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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