DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and Srsf4

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001356237.1 Gene:Srsf4 / 57317 MGIID:1890577 Length:496 Species:Mus musculus


Alignment Length:224 Identity:73/224 - (32%)
Similarity:104/224 - (46%) Gaps:48/224 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RKRSGSSPGG---------GGGHDDDYAENGPRNGSGGGSSHKKQSKRSRSRSGSRDGKSR-RDR 84
            |.|||||...         .|.|.        |:.|...|..:.:||:.:|||.|:|.||| |.|
Mouse   210 RSRSGSSKSSHSKSRSRSRSGSHS--------RSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSR 266

  Fly    85 GNERSSHRDKDKERDR--NRDGGDR------DRHRREGGDRDRERERERERDRS-RRSRSRDERG 140
            ..::|..:.||...|:  |.|...:      .||..:...|.:||..|.||.|| .|:||:::  
Mouse   267 SPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEK-- 329

  Fly   141 GGGRYGDRDKDR-----RSRDR-RGGSKSLQVDRSRDKRR-RSRSRDQQRKRLSPIRERKRSHSR 198
                  .|.:::     |||.| :.||:|.  .||:|||: |.||||:.|.|.....||.|.||.
Mouse   330 ------SRSQEKSLLKSRSRSRSKVGSRSR--SRSKDKRKGRKRSRDESRSRSRSKSERSRKHSS 386

  Fly   199 SRD----RNSRRRGTNSPRRRSPPNGADR 223
            .||    .:|.::..::...|||.....:
Mouse   387 KRDSKVSSSSSKKKKDTDHSRSPSRSVSK 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 3/11 (27%)
Srsf4NP_001356237.1 RRM_SF <42..92 CDD:473069
RRM2_SRSF4_like 109..180 CDD:410012
U2AF_lg 250..>361 CDD:273727 41/120 (34%)
Blue background indicates that the domain is not in the aligned region.

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