DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and NCL

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_005372.2 Gene:NCL / 4691 HGNCID:7667 Length:710 Species:Homo sapiens


Alignment Length:537 Identity:107/537 - (19%)
Similarity:175/537 - (32%) Gaps:192/537 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 GSGGSGGRKRSGSSPGGGGGHDDDYAENGPRNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNE 87
            |..|:...|...::||..|...       |..|:..|.:.||:           |.....|..:|
Human   108 GKKGATPGKALVATPGKKGAAI-------PAKGAKNGKNAKKE-----------DSDEEEDDDSE 154

  Fly    88 RSSHRDKDKERDR----------------NRDGGDRDRHRREGGDRDRERERERE---------- 126
            .....|:|::.|.                :.|..|.|....|..|.|.|.:.|.|          
Human   155 EDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGK 219

  Fly   127 --------------RDRSRRSRSRDERGGGGRYGDRDKDRRSRDRRGGSKSLQVDRSRDKRRRSR 177
                          .|........||        |.|.|....|          |...|......
Human   220 KAAKVVPVKAKNVAEDEDEEEDDEDE--------DDDDDEDDED----------DDDEDDEEEEE 266

  Fly   178 SRDQQRKRLSPIRERK---RSHSRSRDRNSRRRGT-----------------NSPRRRS------ 216
            ..:::..:.:|.:.:|   :..:....:..:..||                 ::|..::      
Human   267 EEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF 331

  Fly   217 ------------------------------------------------PPNGADRTTPTELSPEE 233
                                                            .|.|.|       |.:|
Human   332 AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKD-------SKKE 389

  Fly   234 RDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEF-DDPESVALALGL 297
            |||||:....|..:|...:|:|.|....::|.|     :|..:.|||||||| .:.::.......
Human   390 RDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV-----SKDGKSKGIAYIEFKTEADAEKTFEEK 449

  Fly   298 SGQRLLGVPIMVQHTQAEKNRLQ------NAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFE 356
            .|..:.|..|.:.:| .||.:.|      |:..:.:.|:      |.:.:|.::.||:.|:.:||
Human   450 QGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKT------LVLSNLSYSATEETLQEVFE 507

  Fly   357 PFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKV------GNVTERL 415
               |...|: :...:.|:||||.||.:.:.:|||:||...|..|:.||.:::      |:...|.
Human   508 ---KATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 568

  Fly   416 DMNTT------SLDTDE 426
            ..:.|      |.||.|
Human   569 QPSKTLFVKGLSEDTTE 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 67/287 (23%)
NCLNP_005372.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..303 39/230 (17%)
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135 8/33 (24%)
RRM1_NCL 307..381 CDD:409837 1/73 (1%)
RRM2_NCL 390..465 CDD:409838 25/80 (31%)
RRM3_NCL 485..557 CDD:409839 26/81 (32%)
RRM4_NCL 572..649 CDD:409840 5/14 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 640..710
Blue background indicates that the domain is not in the aligned region.

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