DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and CSTF2

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:175 Identity:55/175 - (31%)
Similarity:81/175 - (46%) Gaps:34/175 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401
            ::||::.:..||:.|:.||...|.:.:.:|:.|.|||:.|||||..|.:.:.|..|:..|||.|.
Human    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly   402 AGRLMKVGN-VTERLDMNTTSLDT-------------------DEMDRTGIDLGATGRLQLMFKL 446
            :||.::|.| .:|:......||.|                   :.:.:....|..    :.||:|
Human    83 SGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPP----EQMFEL 143

  Fly   447 AEGAGLAV---PQAAANALLATAPQ--PAPLQQQEVA----PSIA 482
            .:...|.|   ||.|.|.||.. ||  .|.||.|.|.    |.||
Human   144 MKQMKLCVQNSPQEARNMLLQN-PQLAYALLQAQVVMRIVDPEIA 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 55/175 (31%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 55/175 (31%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 29/75 (39%)
CSTF2_hinge 112..191 CDD:433869 22/81 (27%)
PHA03378 <253..455 CDD:223065
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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