DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rat1 and xrn1

DIOPT Version :10

Sequence 1:NP_609082.1 Gene:Rat1 / 33964 FlyBaseID:FBgn0031868 Length:908 Species:Drosophila melanogaster
Sequence 2:XP_002937144.2 Gene:xrn1 / 733797 XenbaseID:XB-GENE-1012713 Length:1740 Species:Xenopus tropicalis


Alignment Length:122 Identity:30/122 - (24%)
Similarity:47/122 - (38%) Gaps:35/122 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 LVGLTEE------------MDEFIELLELSLPRLYR----GAVTHFQKSNKSH--LRKTKSKVEP 299
            ||.|:||            .:|||:|.||....|.|    |.:.....|.|.|  :..|..:.:|
 Frog   185 LVLLSEEEIQQTCEMLQQCKEEFIKLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP 249

  Fly   300 AAETVAKIKESTVWQMENELYEFARDQFHFVQKKLRTPGRNVM---QDFMYEKIKPN 353
            .||     ....::..|.:.....|:.|         .|||::   ::|.:..:|.|
 Frog   250 NAE-----GRYNLYTAEGKYIFKERESF---------DGRNILKLFENFYFGSLKLN 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rat1NP_609082.1 XRN1 1..735 CDD:227382 30/122 (25%)
xrn1XP_002937144.2 XRN1 1..734 CDD:227382 30/122 (25%)
SH3_12 1101..1171 CDD:465661
PHA03247 <1460..1699 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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