DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rat1 and xrn1

DIOPT Version :10

Sequence 1:NP_609082.1 Gene:Rat1 / 33964 FlyBaseID:FBgn0031868 Length:908 Species:Drosophila melanogaster
Sequence 2:NP_957327.2 Gene:xrn1 / 394008 ZFINID:ZDB-GENE-040426-1203 Length:1697 Species:Danio rerio


Alignment Length:695 Identity:274/695 - (39%)
Similarity:376/695 - (54%) Gaps:107/695 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||||.|:||:|.:||.:               ..:.::..:|     ||||||||||||||.|:|
Zfish     1 MGVPKFYRWISERYPCL---------------SEVVKEHQIP-----EFDNLYLDMNGIIHQCSH 45

  Fly    66 PEDKPA--PKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTE 128
            |.|:..  ..:|:::...||..::.||.|::|||:.:||:|||||||||||||.||||:|||..|
Zfish    46 PNDEDVHFRISEEKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEE 110

  Fly   129 KRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGI 193
            |       .::.|.:|..||.|    ..||||||||||.||.||.:.|.||||::.:.:..|:|:
Zfish   111 K-------IKKALEKGEVLPTE----ARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKTWQGV 164

  Fly   194 KVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFL 258
            .|.||....|||||||||::||.:..:|.|:|||:|.|.|.|||||||||.:|||:|:::|||  
Zfish   165 NVYLSGHETPGEGEHKIMEFIRSESTKPGHNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREE-- 227

  Fly   259 PNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLE--M 321
                    :..| |.:..|.:    |||            .|..|..:.||::|||:.....  .
Zfish   228 --------VRFG-GKKSQKRI----TAP------------EETTFHLLHLSLMREYIDYEFSELR 267

  Fly   322 PNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDV 386
            ..:.|||..||.:||||.|.|.|||||:||||.|.|...|:..|...|...:....|||.::|.:
Zfish   268 KKISFEYDLERIIDDWVLMGFLVGNDFIPHLPHLHINHDALPLLYRTYINVLPSLGGYLNENGHL 332

  Fly   387 NLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNSQQ 451
            ||...:..:..|.:.:      |:...|.|                  ::...| .|.||.....
Zfish   333 NLTHFEKYLEKLSDFD------REHFSEVF------------------VDLKWF-ESKVGNKYVN 372

  Fly   452 RSVGNYKEEAAA--LRNRKRTSD---MANLDD-----------EDEEENNDEVRLWEDGF---KD 497
            .:.|...|||..  |:..|.:.|   :|.||.           |..||:.::..::|..|   |.
Zfish   373 EAAGLAAEEADGRDLKKSKSSDDSLCLAALDGVRDSHSTAGRAEGAEEDGEDDDMFETEFRQYKR 437

  Fly   498 RYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLST 562
            .||.:|..|...:.:|....|..||.|:.|:|.|||.|..||:||:|||||||.||..||.|||.
Zfish   438 TYYMTKMGVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFLSDVRNISGLSL 502

  Fly   563 MFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVA 627
            .|:. .|||.|.|||:.|.|:||...:|:.:..||:...|||:::||:|||.|||||:..|:.|.
Zfish   503 TFDL-AKPFMPFEQLLAVLPSASKDLLPQCYQHLMTSLSSPIVEYYPQDFKTDLNGKQQEWEAVV 566

  Fly   628 LLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYISNQSPHY 672
            |:||:|||.|..|:.||...||..|..||:..:..:|..::...|
Zfish   567 LIPFIDEKCLLAAMEPYTHNLTPSEKARNRHTECAVYCYDKDLDY 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rat1NP_609082.1 XRN1 1..735 CDD:227382 274/695 (39%)
xrn1NP_957327.2 XRN1 1..734 CDD:227382 274/695 (39%)
XRN1_D1 659..835 CDD:436418
XRN1_D2_D3 848..929 CDD:436419
SH3_12 1101..1170 CDD:465661
Blue background indicates that the domain is not in the aligned region.

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