DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rat1 and pcm

DIOPT Version :10

Sequence 1:NP_609082.1 Gene:Rat1 / 33964 FlyBaseID:FBgn0031868 Length:908 Species:Drosophila melanogaster
Sequence 2:NP_001162796.1 Gene:pcm / 32935 FlyBaseID:FBgn0020261 Length:1613 Species:Drosophila melanogaster


Alignment Length:673 Identity:265/673 - (39%)
Similarity:367/673 - (54%) Gaps:101/673 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||||.|||::|.:||.:               ..:..:..:|     ||||||||||||:|.|:|
  Fly     1 MGVPKFFRYISERYPCL---------------SELAREHCIP-----EFDNLYLDMNGIVHNCSH 45

  Fly    66 PEDKPA--PKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTE 128
            |:|...  ...|:::...||..:|:||.:::|::|.::::||||||||||||||||||.|:|..:
  Fly    46 PDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQ 110

  Fly   129 KRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGI 193
            :..:.|:       ||     |..:.|.||||||||||.||.||.:.|..|:..:.:.:|.|:..
  Fly   111 QEAKAAQ-------RG-----ELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRC 163

  Fly   194 KVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFL 258
            .||||....|||||||||||||..:.|||:||||:|.|.|.|||||:|||.|||.:|.::|||. 
  Fly   164 TVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLREEV- 227

  Fly   259 PNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEMPN 323
                       .||..:.:         ||..         |.:|..:.|.:|||||:  ||...
  Fly   228 -----------KFGRNVKR---------TSVE---------ETRFFLLHLGLLREYLE--LEFDA 261

  Fly   324 L---PFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKT-RGYLTDSG 384
            |   ..:....:.:||||.|.|.|||||:||||.|.|...|:..|...|.. :|.| .|.:.::|
  Fly   262 LRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIG-IYPTLGGNINENG 325

  Fly   385 DVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNS 449
            .:||.|:|:.::.|...|...||     |.....:....|.:..:.|.|.:.:|.          
  Fly   326 KLNLRRLQIFISALTEVELDHFK-----EHADDLKYMNNKSEAFDMDVGEITESQ---------- 375

  Fly   450 QQRSVGNYKEEAAALRNRKRTSDMANLDDEDEEENNDE--VRLWE-DGFKDRYYESKFDVAPGNQ 511
                  |...:..||.|:    .|...||:.||:.:||  |.|.| ..:|..:|.:||...| |.
  Fly   376 ------NLDSDLGALINK----SMLLYDDDSEEDCSDENAVLLKEFQNYKRNFYRNKFKRDP-ND 429

  Fly   512 QFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQ 576
            :....:...||..|.|||.|||:|..||:||:|:||.||.||..||:.:...|..|| ||.|.:|
  Fly   430 ELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGT-PFLPFQQ 493

  Fly   577 LMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKAL 641
            |:.|.||||:..:|..:..||..|.||:.:|||.:|:.||||||..|:.|.|:||:||.||..|:
  Fly   494 LLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAM 558

  Fly   642 VPYYDQLTGEEVKRNKRGDNYLY 664
            :|...||:.||.:||:.|..|:|
  Fly   559 LPCEAQLSLEERERNRHGPMYVY 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rat1NP_609082.1 XRN1 1..735 CDD:227382 265/673 (39%)
pcmNP_001162796.1 XRN1 1..843 CDD:227382 265/673 (39%)
XRN1_D2_D3 811..889 CDD:436419
SH3_12 1060..1137 CDD:465661
XRN1_DBM 1329..1351 CDD:408065
Blue background indicates that the domain is not in the aligned region.

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