Protein Alignment Rat1 and pcm

DIOPT Version :10

• Sequence 1: NP_609082.1
• Gene: Rat1 / 33964
• FlyBaseID: FBgn0031868
• Length: 908
• Species: Drosophila melanogaster
• Sequence 2: XP_313715.6
• Gene: pcm / 1274572
• VectorBaseID: AGAMI1_007906
• Length: 1707
• Species: Anopheles gambiae
• Alignment Length: 239
• Identity: 50/239 - (20%)
• Similarity: 78/239 - (32%)
• Gaps: 46/239 - (19%)

  Fly    81 YNRVPKTGSTSFVNLTYDLCKKNAFHVLHINITANMQVLSLPNQLKFVRNITAWDSMKPAFY--- 142
            ||:|   ...||.|:...|...:|       .||...|.....|.........|...|.|.|
Mosquito   244 YNKV---ADNSFPNILAILSGYSA-------STAKENVCDTDKQGCLDEMPMIWKYFKNASYLTG 298

  Fly   143 -------HGHMAFLDFSKFGMPSKPL--YINLIRQPLDRLVSYYYFLRYGDDYRPYLVRHRAGDT 198
                   ..|..:|   |.|...||:  |...:.:.|:..:..|....:  ||..|.:..|..:.
Mosquito   299 YAEDESNSNHFNYL---KPGFSKKPMDYYFRPLLRALESEMDVYRLPEH--DYMRYCLGRRIANR 358

  Fly   199 MTFDECVARQKPDCDPTNMWLQIPFFCGHHAECWNPGSSWALEQAKRNLANDYFLVGLTEEM--- 260
            ..:|..:...|.......:|   ..|..:|....:|....|:::.......|....|..|||
Mosquito   359 YIYDYGLQFTKRFVHDRPIW---GMFWSNHFSHDDPFMPSAMQEKVLGDLIDMHADGQFEEMIMI 420

  Fly   261 ------DEFIEL-------LELSLPRLYRGAVTHFQKSNKSHLR 291
                  ..|.:|       ||..||.::......|:::..|::|
Mosquito   421 FFADHGTRFGDLTYLKEGFLEERLPMMFIYLPPWFRETYPSYVR 464

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rat1	NP_609082.1	XRN1	1..735	CDD:227382	50/239 (21%)
pcm	XP_313715.6	None