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Protein Alignment mmy and Uap1l1

DIOPT Version :10

Sequence 1:	NP_609032.1	Gene:	mmy / 33903	FlyBaseID:	FBgn0259749	Length:	520	Species:	Drosophila melanogaster
Sequence 2:	NP_001028465.1	Gene:	Uap1l1 / 227620	MGIID:	2443318	Length:	507	Species:	Mus musculus

Alignment Length:	492	Identity:	235/492 - (47%)
Similarity:	318/492 - (64%)	Gaps:	22/492 - (4%)

- Green bases have known domain annotations that are detailed below.

  Fly    44 LHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYFDRATVSMNENGIKLDD---RL 105
            :.::|.:.||:|||:|:.:|..:.|..|:.::..|..|.::.:..||..:.......|.|   ||
Mouse     7 VRAQLQRAGQDHLLRFYADLAPEARAALLAELASLEADALREHCQRAAAAGALAPGPLPDLAARL 71

  Fly   106 QPLPEGKLISIARAPLEKLDAYRDEGLLQISNGHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRK 170
            ||||..::.|..|...|....:.:||..|||...|||||:|||||||||..:|||||.|||.|:|
Mouse    72 QPLPPERVGSAIRCDQETRLRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYQVGLPSQK 136

  Fly   171 TLFRIQAERILKLEELAQEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGS 235
            ||:::|||||.::::||.:..|....:.|||||||.|:.||..:|..::||.|...||:||||..
Mouse   137 TLYQLQAERIRRVQQLADQRQGTHCTVPWYIMTSEFTLGPTIKFFKEHDFFHLDPTNVVLFEQRM 201

  Fly   236 LPCFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAHSVDNILIKVADPV 300
            ||...::|:.||:.|.:||.|||||||:|.|:....||:||::|||.::|.:.|||||:::||||
Mouse   202 LPAVTFEGKAILERKDKVAMAPDGNGGLYCALADHQILEDMKQRGVEFVHVYCVDNILVRLADPV 266

  Fly   301 FIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQVVEYSEISAKTAEMRNSDGRLTFSAGNI 365
            |||:||.:.|||.|||||||.|.|.||||..|||..|||||||||.:.|....:||.|.::||||
Mouse   267 FIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYSEISPEIAGQLGADGGLLYNAGNI 331

  Fly   366 CNHFFSSNFLQKIGSTYEQELKLHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFV 430
            |||||:..||..:...:|..|:||||.||:|:||..|..:.|.:|||||:||||||||:||:.||
Mouse   332 CNHFFTRGFLDVVTREFEPLLRLHVAMKKVPYVDEEGNLVKPLRPNGIKMEKFVFDVFQFAKNFV 396

  Fly   431 AMEVPRDEEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGG---IVHG-------------- 478
            |.||.|:||||.|||.|.|.:|.|||.|..|...|.::...||.   .|||
Mouse   397 AFEVCREEEFSPLKNDDTADRDNPSTCRRALLAQHYRWALQAGARFLDVHGVQLTEQSGMLPNGD 461

  Fly   479 --EVCEISPFVTYAGENLASHVEGKSFTSPVYLRDSR 513
              .:|||||.|:|:||.|..:::|:...||..|.:.:
Mouse   462 PPAICEISPLVSYSGEGLEMYLQGRQLQSPFILDEDQ 498

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.