DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11147 and ABCA12

DIOPT Version :10

Sequence 1:NP_608954.1 Gene:CG11147 / 33803 FlyBaseID:FBgn0031734 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_001318859.1 Gene:ABCA12 / 836292 AraportID:AT5G61700 Length:917 Species:Arabidopsis thaliana


Alignment Length:314 Identity:80/314 - (25%)
Similarity:147/314 - (46%) Gaps:42/314 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 YYGSKSN-PKIVLNQLNMNVMRGSIYGLLGASGCGKTTLLSCIVGQRRLNGGEVVVLGAKPGEPG 75
            |.|...| ||:.:..|.::|..|..:|:||.:|.|||:.:|.:.|..:.:.|..:|.|....:..
plant   604 YPGRDGNPPKMAVRGLYLSVSSGECFGMLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDICKDM 668

  Fly    76 SGVPGSRVGFMPQEIALVEEMTVKETIFYFGRIYGLTDERIREKFKLLKELLQL-------PPAR 133
            :.|..| :|..||...|.|.:|.:|.:.::||:..:....:.:..:...:.:.|       .||.
plant   669 NKVYTS-MGVCPQHDLLWETLTGREHLLFYGRLKNIKGSDLTQAVEESLKSVSLYDGGVGDKPAG 732

  Fly   134 QMIKQCSGGQQRRLSFACAMIHDPELLILDEPTVGLDPMLREKIWDFLVETTRNSKLAVIITTHY 198
            ..    |||.:||||.|.::|.:|:::.||||:.||||..|:.:|:.:....:|:  |:|:|||.
plant   733 NY----SGGMKRRLSVAISLIGNPKVVYLDEPSTGLDPASRKNLWNVIKRAKQNT--AIILTTHS 791

  Fly   199 IEEAK-QANCIGLMRNGVLLAEDTPTNIMIKFGTQSIEDAFLILSQRQGNEDELAQIMDHNKNQA 262
            :|||: ..:.:|:..:|.|........:..::|...:    ..::....:|:|:.::        
plant   792 MEEAEFLCDRLGIFVDGGLQCIGNSKELKSRYGGSYV----FTMTTSSKHEEEVERL-------- 844

  Fly   263 LPAAVLPPEVIDTHEPNMPEKQPI----PFEEPLNENRKKIFFTTKGRVKALMT 312
                      :::..||..:...:    .||.|..|.|....|....:.||..|
plant   845 ----------VESVSPNAKKIYHLAGTQKFELPKQEVRIAEVFRAVEKAKANFT 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11147NP_608954.1 CcmA 4..245 CDD:440746 67/241 (28%)
ABC2_membrane_3 322..702 CDD:463674
YadH 513..710 CDD:440604
ABCA12NP_001318859.1 rim_protein <329..>912 CDD:130324 80/314 (25%)
ABC_subfamily_A 599..820 CDD:213230 66/222 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.