DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and Grid1

DIOPT Version :10

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:82 Identity:22/82 - (26%)
Similarity:34/82 - (41%) Gaps:31/82 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AFATVALAAEEVKT------EDGVLVLTKDNF--DSVIANNEFVLVEFYAPWCGH--CKALAPEY 66
            |.||::|...:.||      ..|||.:.::::  |.:              |||.  ||....| 
Mouse    65 AVATISLTMLKSKTFVKKTRSGGVLKIVREHYLRDDI--------------WCGSEVCKECKDE- 114

  Fly    67 AKAAKVLADK---ESNI 80
               |.||.::   |||:
Mouse   115 ---APVLQEETCIESNL 128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..387 CDD:380605 16/62 (26%)
PBP2_iGluR_Kainate 422..795 CDD:270432
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 22/82 (27%)
PBP1_iGluR_delta_1 25..425 CDD:380615 22/82 (27%)
PBP2_iGluR_delta_1 436..806 CDD:270448
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.

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