DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and LOC101885658

DIOPT Version :10

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:XP_073802919.1 Gene:LOC101885658 / 101885658 -ID:- Length:919 Species:Danio rerio


Alignment Length:948 Identity:268/948 - (28%)
Similarity:461/948 - (48%) Gaps:133/948 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LQFLVLLALAIASGANEDTLVIKIGAIFFDTEMKLAD----AFSAALEEVN-----AINPALKLD 59
            ::..||:.:|.:||...   |::.|.||...|...:.    ||..||..:|     ..|..|..|
Zfish    29 IRLAVLMFVAGSSGMPH---VLRFGGIFESIESGPSGPEELAFKFALNTINRNRTLLPNTTLTYD 90

  Fly    60 AIKRYVTVDDSIVLQDISCDLIGSGVAAIFGPSSKTNSDIVEVLCNMTGIPHLQFDW-HPQQSNR 123
             |:| :.|.||......:|:.:..|||||||||..::::.|:.:.|..|:||:|..| |....||
Zfish    91 -IQR-INVFDSFEASRKACEQLSLGVAAIFGPSHSSSANAVQSISNALGVPHIQTRWKHQVSDNR 153

  Fly   124 ERMNHQLTVNVAPMELFLSAAFSDILASKTFDWKSFTIAYERSSHLIRLQHILAWKQLHKAGIKM 188
            :    ...|::.|....||.|..|::  ..|.|::.|:.|:.|:.|||||.::.....:...:|:
Zfish   154 D----SYYVSLYPDFCSLSRAILDLV--HFFRWRTVTVVYDDSTGLIRLQELIKAPSRYNIRLKI 212

  Fly   189 QEFERG-DDYRILWKRINNAREKFVLLDCPSDILVDVINASIGYNMTGSFNHLFLTNLDTHLSGI 252
            ::.... .|.:.|.|.:..|:|..|:.||..::...::..::...|...:.|...|.||  |..:
Zfish   213 RQLAADTKDAKPLLKEMKKAKEFHVIFDCSHEMAAWILKQALSMGMVTEYYHYIFTTLD--LFAL 275

  Fly   253 DGFYSRDFTVAVAAVRIRTYVPPPVHDEIDVF-----------DNSVDTRFSSLGSQLVYDSIVL 306
            |....|...|.:...||.....|.|...|:.:           |:.:...|.:..:.|:||::.:
Zfish   276 DMEPYRFSGVNMTGFRILNTESPQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHV 340

  Fly   307 FYNALLEISQRPGFYIPNFSCGRGF-WQPGPRLVEQMKQITPKMVKPPFKTQRLQIN-ADGQRED 369
            ...|:.:.||   ..:.:..|.|.. |:.|.|.:..:|:.:...:     |.|:..| .:|.|.|
Zfish   341 VAVAVQQASQ---ITVSSLQCNRHKPWRFGGRFISLIKEASWDGL-----TGRILFNKTNGLRTD 397

  Fly   370 FNLEVYNPIIDRVTHIWNKEFQLVDFEKLRENSTQAL---------------KQKRLQNKEDFSQ 419
            |:|:|.:                     |:||..:.:               |.|.....:..|.
Zfish   398 FDLDVIS---------------------LKENGLEKIGTWDPPRGLNMSENHKSKITNITDSLSN 441

  Fly   420 KPIRYTVATRVGKPYFSWREEPEGVHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSY 484
            |.:|  |:|.:.:||..:::..:.::  |||||||:.|||:..|:....|.:....|.|.|||::
Zfish   442 KSLR--VSTILEEPYVMFKKSDKPLY--GNERFEGFCVDLLRELSGILGFRYEIRLVEDGKYGAF 502

  Fly   485 DANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKEPPPKADIYAFL 549
            :.::.:|:|::|:|:|:.|.:.:..||||..|..|:||:.|||.||||||..|.......:::||
Zfish   503 EESSGQWNGMVRELMDHKADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFL 567

  Fly   550 NPYNAEVWLFVMIAMMITAFALIFTGRIDQYEWDQPVE-NVNREMERQNIWHLSNALWLVLGSML 613
            ||.:.::|:::::|.:..:..|....|...|||..|.. |.:.::...| :.|.|:.|..:|:::
Zfish   568 NPLSPDIWMYILLACLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENN-FTLLNSFWFGVGALM 631

  Fly   614 NQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQFGTI 678
            .||.:|:|:.|..|::...||.|.|:|..:|.|.||||:|..::...|.|..||..|.|:.:|.:
Zfish   632 RQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKILYGVV 696

  Fly   679 RGGATSVYFSESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQR 743
            ..|||..:|.::..:.....|..|.|.:.....::.|||::||..|  .||||||:|.:::..||
Zfish   697 EDGATMTFFKKTKISTYDKMWEFMNSRRQSVMVQSVEEGIERVLTS--DYAFLMESTAIEFVTQR 759

  Fly   744 NCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNSN----ESTCDSN 804
            ||.|||:|.....|.||:..|:.:.:|..:::.||:|.|.|:|..::.||:..|    |.:.:::
Zfish   760 NCNLTQVGGLIDSKAYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEAS 824

  Fly   805 VPTIDDGQFDMDSVGGLFVVLIVGVVVGLVIGVAEFLW------HVQ------------RISV-- 849
            .       ..:.::||:|:||..|:|:.:.:.|.|.|:      |:|            |:|:  
Zfish   825 A-------LGVQNIGGIFIVLAAGLVLSVFVAVGEVLYKSKQNAHIQKRSFCSAMVEELRVSLKC 882

  Fly   850 ----KEKIPPMLALKAEFYFVIRFWLTRKPLHTYRQSR 883
                |:|..|...:|.|  .||.       :||:...|
Zfish   883 QRRRKQKPQPPAIVKTE--EVIN-------MHTFNDRR 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..387 CDD:380605 99/384 (26%)
PBP2_iGluR_Kainate 422..795 CDD:270432 130/373 (35%)
LOC101885658XP_073802919.1 None

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