DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and col-169

DIOPT Version :10

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:NP_872255.1 Gene:col-169 / 180909 WormBaseID:WBGene00000742 Length:300 Species:Caenorhabditis elegans


Alignment Length:295 Identity:112/295 - (37%)
Similarity:126/295 - (42%) Gaps:91/295 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   878 GFPGA--DGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAK 940
            |:..|  :||||:.|  |..|. |||                   .|||||.||.|   |.|||.
 Worm    89 GYESAAVEGSVGHQG--GCCGC-GVS-------------------AAGPPGAPGQD---GEDGAD 128

  Fly   941 GEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKR----GPAGIPGVSGAKGDKGATGLTG 1001
            |:|               ||||||||.|.| .|.||...    .|||.||.:|..|.||..|.:|
 Worm   129 GQP---------------GAPGNDGPDGPA-ATPAPAHEFCFDCPAGPPGPAGPAGPKGPNGNSG 177

  Fly  1002 NDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASE-KGQ 1065
            :|      |.||||      |:.|.||.|      |.||:.|..|.||..|.||.||..:| .|.
 Worm   178 SD------GQPGAP------GNNGNAGGP------GAPGQAGQDGHPGNAGAPGAPGKVNEVPGP 224

  Fly  1066 KGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGL 1130
            .|.||..|..|..||||:||.||..        |..||.|..||.|.:|..|:.|.||:.|..  
 Worm   225 AGAPGAPGPDGPAGPAGSPGAPGNP--------GSQGPQGPAGDNGGAGSPGQPGANGDNGAD-- 279

  Fly  1131 QGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGAPG 1165
                      |..||||     |.|..|....|||
 Worm   280 ----------GETGAPG-----GCDHCPPPRTAPG 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 gly_rich_SclB <107..>361 CDD:468478
gly_rich_SclB <355..>642 CDD:468478
gly_rich_SclB <543..820 CDD:468478
gly_rich_SclB <727..>968 CDD:468478 34/91 (37%)
gly_rich_SclB <969..>1218 CDD:468478 77/202 (38%)
gly_rich_SclB <1186..>1420 CDD:468478
gly_rich_SclB <1321..>1547 CDD:468478
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col-169NP_872255.1 Col_cuticle_N 16..68 CDD:198156
gly_rich_SclB <101..>286 CDD:468478 98/263 (37%)
Blue background indicates that the domain is not in the aligned region.

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