Protein Alignment Col4a1 and col-168

DIOPT Version :10

• Sequence 1: NP_723044.1
• Gene: Col4a1 / 33727
• FlyBaseID: FBgn0000299
• Length: 1779
• Species: Drosophila melanogaster
• Sequence 2: NP_001367410.1
• Gene: col-168 / 180908
• WormBaseID: WBGene00000741
• Length: 301
• Species: Caenorhabditis elegans
• Alignment Length: 284
• Identity: 110/284 - (38%)
• Similarity: 124/284 - (43%)
• Gaps: 77/284 - (27%)

  Fly   887 GYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGM 951
            ||.    .||:.|.|     ||.:|.....| ...|||||.||.|   |.|||.|:|
 Worm    89 GYE----SAGVEGSS-----VGHQGGCCGCG-VSAAGPPGAPGQD---GEDGADGQP-------- 132

  Fly   952 PGNKGDRGAPGNDGPKGFAGVTGAPGKR----GPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPP 1012
                   ||||||||.|.| .|.||...    .|||.||.:|..|.||..|.:|:|      |.|
 Worm   133 -------GAPGNDGPDGPA-ATPAPAHEFCFDCPAGPPGPAGPAGPKGPNGNSGSD------GQP 183

  Fly  1013 GAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASE-KGQKGEPGPSGLRG 1076
            |||      |:.|.||.|      |.||:.|..|.||..|.||.||..:| .|..|.||..|..|
 Worm   184 GAP------GNNGNAGGP------GAPGQAGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDG 236

  Fly  1077 DTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKG 1141
            ..||||:||.||..        |..||.|..||.|.:|..|:.|.||:.|..            |
 Worm   237 PAGPAGSPGAPGNP--------GSQGPQGPAGDNGGAGSPGQPGANGDNGAD------------G 281

  Fly  1142 SVGAPGIPGAPGMDGLPGAAGAPG 1165
            .:||||     |.|..|....|||
 Worm   282 EIGAPG-----GCDHCPPPRTAPG 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Col4a1	NP_723044.1	gly_rich_SclB	<107..>361	CDD:468478
		gly_rich_SclB	<355..>642	CDD:468478
		gly_rich_SclB	<543..820	CDD:468478
		gly_rich_SclB	<727..>968	CDD:468478	32/80 (40%)
		gly_rich_SclB	<969..>1218	CDD:468478	77/202 (38%)
		gly_rich_SclB	<1186..>1420	CDD:468478
		gly_rich_SclB	<1321..>1547	CDD:468478
		C4	1555..1662	CDD:128421
		C4	1663..1777	CDD:128421
col-168	NP_001367410.1	Col_cuticle_N	16..68	CDD:198156
		gly_rich_SclB	<102..>287	CDD:468478	94/242 (39%)