DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Col4a1 and col-101

DIOPT Version :10

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:NP_499905.2 Gene:col-101 / 176854 WormBaseID:WBGene00000675 Length:327 Species:Caenorhabditis elegans


Alignment Length:332 Identity:110/332 - (33%)
Similarity:128/332 - (38%) Gaps:107/332 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   699 GNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRD-----GAKGDKGSFGRSGEKGEPGSCALDEIKM 758
            |..|..||..|:.|          |..:|.:.     |..|..|.|...|..|  |||....:  
 Worm    88 GVAGVEGRIKRNVY----------ERKYHAKQRRQSYGDSGASGGFSSGGSGG--GSCCSCGV-- 138

  Fly   759 PAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGV 823
                     |..|..|.||:||:|                                 ||.||.|.
 Worm   139 ---------GSAGPAGSPGQDGAP---------------------------------GNDGAPGA 161

  Fly   824 PGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGY 888
            |||||:|      .::.||.  |........|.||||.:|..|:|   ||:|..|.||..|....
 Worm   162 PGNPGQD------AQDNQPA--GPDSFCFDCPAGPPGPSGAPGQK---GPSGAPGQPGRSGGASL 215

  Fly   889 PGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPG--IDGVRGRDGAKGEPGSPGLVGM 951
            ||..|.||.||.||:||..|.            ||.||.||  :|          .||:||..|.
 Worm   216 PGPPGPAGPPGPSGQPGSNGN------------AGAPGAPGHVVD----------VPGTPGPAGP 258

  Fly   952 PGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRG------ 1010
            ||..|..||||..|..|.|    .||:.||.|..|..||.|..|:.|..||||..||:|      
 Worm   259 PGPAGPAGAPGQPGQAGHA----QPGQPGPQGDAGAPGAPGQPGSAGQPGNDGGDGGQGACDHCP 319

  Fly  1011 -PPGAPG 1016
             |..|||
 Worm   320 PPRTAPG 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 gly_rich_SclB <107..>361 CDD:468478
gly_rich_SclB <355..>642 CDD:468478
gly_rich_SclB <543..820 CDD:468478 27/125 (22%)
gly_rich_SclB <727..>968 CDD:468478 79/247 (32%)
gly_rich_SclB <969..>1218 CDD:468478 23/55 (42%)
gly_rich_SclB <1186..>1420 CDD:468478
gly_rich_SclB <1321..>1547 CDD:468478
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col-101NP_499905.2 Col_cuticle_N 31..83 CDD:198156
gly_rich_SclB <141..>300 CDD:468478 80/228 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.