DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and dpy-2

DIOPT Version :10

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:NP_495367.1 Gene:dpy-2 / 174107 WormBaseID:WBGene00001064 Length:380 Species:Caenorhabditis elegans


Alignment Length:320 Identity:107/320 - (33%)
Similarity:137/320 - (42%) Gaps:84/320 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   748 PGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQG---PPGV-EGPRGL 808
            |..|...|     :|..|:.|...:||.||.||:||..|       |.|..   |..| |.|..|
 Worm   117 PACCIPGE-----RGPSGDSGLPALPGAPGPDGAPGRPG-------TTPNASCIPERVFEPPPCL 169

  Fly   809 NGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGP 873
            ..|:|.:|..|..|.||:||:.|:.|.||.:|.||..|:||::  ||:||||.:|..|:|| |.|
 Worm   170 PCPQGPRGVPGHPGFPGDPGEYGIGGRPGSDGMPGKPGDPGLA--GPIGPPGESGPIGDKG-RTP 231

  Fly   874 TGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDG 938
            ...:          .||..||:|||               ||.||.|.|   |:||.||..|..|
 Worm   232 EAHV----------IPGPPGDSGLP---------------GPWGPPGSA---GMPGEDGYAGTPG 268

  Fly   939 AKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPG----------VSGAKG- 992
            .||.||.||..| ||     |.||.:||         .|::||:|.||          ::..|| 
 Worm   269 EKGWPGPPGAPG-PG-----GMPGPNGP---------TGEQGPSGTPGTCVCQDTEVVMNDEKGR 318

  Fly   993 -----DKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGF 1047
                 |..|.|.||......|.....||..:....:.|....      :.:...|.|.|:
 Worm   319 VPAPRDNVAPGATGGSYEPQGGNDAAAPSAISQSQNDGYGNG------ESVSNHKNNGGY 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 gly_rich_SclB <107..>361 CDD:468478
gly_rich_SclB <355..>642 CDD:468478
gly_rich_SclB <543..820 CDD:468478 25/75 (33%)
gly_rich_SclB <727..>968 CDD:468478 87/223 (39%)
gly_rich_SclB <969..>1218 CDD:468478 20/95 (21%)
gly_rich_SclB <1186..>1420 CDD:468478
gly_rich_SclB <1321..>1547 CDD:468478
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
dpy-2NP_495367.1 Col_cuticle_N 26..78 CDD:198156
gly_rich_SclB <122..>269 CDD:468478 70/189 (37%)
Blue background indicates that the domain is not in the aligned region.

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