Protein Alignment Col4a1 and col-62

DIOPT Version :10

• Sequence 1: NP_723044.1
• Gene: Col4a1 / 33727
• FlyBaseID: FBgn0000299
• Length: 1779
• Species: Drosophila melanogaster
• Sequence 2: NP_492091.1
• Gene: col-62 / 172495
• WormBaseID: WBGene00000638
• Length: 316
• Species: Caenorhabditis elegans
• Alignment Length: 264
• Identity: 96/264 - (36%)
• Similarity: 111/264 - (42%)
• Gaps: 81/264 - (30%)

  Fly   452 GKKGEKGTAGLN-GPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGS--- 512
            |::.:|..:..| |.:.|..|.|.|||||..|.||..|.|        |.||.||.||:.|.
 Worm    72 GRRRQKKQSQCNCGQQASNCPAGPPGPPGASGDKGHDGQP--------GQAGKPGQPGVAGPSHH 128

  Fly   513 ------KGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCS 571
                  |..:|..|.|||||.              ||.||..|.||.|.|.|..
 Worm   129 QKQECIKCPQGLPGPAGAPGQ--------------PGPKGPNGNPGAPAQGGGQ----------- 168

  Fly   572 SCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATG 636
                ||         ||.||..|:.|.||:.|.|         |..|.||:.|:.|| ||||.:|
 Worm   169 ----GP---------PGPPGPAGSAGSPGQAGAP---------GNPGSPGKSGQRGR-GLPGPSG 210

  Fly   637 EPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGND 701
            .|               |.:|.|||||..|.....|..|.||..||.|:.|..|:.|..||||||
 Worm   211 AP---------------GSQGPPGAPGQPGSGNAPGPAGPPGPAGPNGQPGHPGQDGQPGAPGND 260

  Fly   702 GTPG 705
            ||||
 Worm   261 GTPG 264

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Col4a1	NP_723044.1	gly_rich_SclB	<107..>361	CDD:468478
		gly_rich_SclB	<355..>642	CDD:468478	68/199 (34%)
		gly_rich_SclB	<543..820	CDD:468478	62/163 (38%)
		gly_rich_SclB	<727..>968	CDD:468478
		gly_rich_SclB	<969..>1218	CDD:468478
		gly_rich_SclB	<1186..>1420	CDD:468478
		gly_rich_SclB	<1321..>1547	CDD:468478
		C4	1555..1662	CDD:128421
		C4	1663..1777	CDD:128421
col-62	NP_492091.1	Col_cuticle_N	6..57	CDD:198156
		gly_rich_SclB	<103..>266	CDD:468478	84/233 (36%)